SRR3554120_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554120_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	869414
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2203	0.2533890643582919	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1442	0.1658588428527721	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1196	0.13756392236609946	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1087	0.12502674215045997	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	987	0.11352474195262556	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	983	0.11306466194471218	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGTGCG	30	2.1648884E-6	45.000004	1
CTCGTAC	20	7.032337E-4	45.0	42
ATAGCCG	25	3.8900187E-5	45.0	1
CCGTAGG	25	3.8900187E-5	45.0	2
AATTGCG	35	1.2114651E-7	45.0	1
AATTCGG	20	7.032337E-4	45.0	2
CGTACAG	35	1.2114651E-7	45.0	1
CGTAAAC	20	7.032337E-4	45.0	45
CGACTAG	25	3.8900187E-5	45.0	1
CGATACG	20	7.032337E-4	45.0	1
TTTCACG	75	0.0	42.0	1
CATACCG	75	0.0	42.0	1
TATAGCG	75	0.0	42.0	1
AATCCGG	120	0.0	41.250004	2
TAACACG	60	3.6379788E-12	41.250004	1
CTAACCG	55	6.002665E-11	40.909092	1
CCAAACG	55	6.002665E-11	40.909092	1
ATACCGG	150	0.0	40.5	2
ACGGGAG	890	0.0	40.19663	5
CAAACGG	275	0.0	40.090908	2