SRR3554119_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554119_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	857232
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2186	0.2550068126248204	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1494	0.17428187468503276	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1109	0.1293698788659313	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1108	0.1292532243313362	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	978	0.11408813483397727	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	974	0.113621516695597	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGAAT	125	0.0	45.000004	11
CGAATAT	125	0.0	45.000004	13
CCACGCG	50	2.1827873E-11	45.000004	1
ACGAATA	125	0.0	45.000004	12
GATAACG	35	1.211447E-7	45.0	1
TAGCGCG	35	1.211447E-7	45.0	1
CCGTCGG	20	7.032283E-4	45.0	2
CCGTAGA	20	7.032283E-4	45.0	41
TATACCG	40	6.8121153E-9	45.0	1
CAATCGA	20	7.032283E-4	45.0	40
ATACCGG	85	0.0	45.0	2
GCTACGA	130	0.0	43.26923	9
ATAACGG	120	0.0	41.249996	2
AGATACG	50	1.0804797E-9	40.500004	1
AATTGCG	45	1.9274012E-8	40.0	1
TAGCGAG	40	3.4568438E-7	39.375	1
TTAACGG	80	0.0	39.375	2
TCGACAG	40	3.4568438E-7	39.375	1
CTTAACG	35	6.2464314E-6	38.571426	1
TAACGCG	35	6.2464314E-6	38.571426	1