SRR3554118_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554118_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	726467
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2624	0.36120016463239213	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1220	0.16793605215377985	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	950	0.13076987667712367	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	883	0.12154715905884231	No Hit
ACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACCATTA	856	0.1178305415111767	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	850	0.11700462650058434	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	775	0.10668068886817983	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	768	0.10571712135582208	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	30	2.1643937E-6	45.000004	1
TCGCATA	25	3.8893828E-5	45.000004	34
CGATTCA	30	2.1643937E-6	45.000004	36
AAACGAT	30	2.1643937E-6	45.000004	44
AACGATA	25	3.8893828E-5	45.000004	45
ACCGGTT	20	7.031571E-4	45.0	35
ATACGCG	20	7.031571E-4	45.0	1
CCCGATT	20	7.031571E-4	45.0	42
CGATAGG	115	0.0	43.04348	2
TTACGGG	275	0.0	41.727272	3
CGGGATA	245	0.0	41.32653	6
CCTAGCG	60	3.6379788E-12	41.250004	1
TATGGGC	120	0.0	41.250004	4
CGAAACG	55	6.002665E-11	40.909092	1
GCGATAG	55	6.002665E-11	40.909092	1
AACGGGA	690	0.0	40.76087	4
CGTAACG	50	1.0804797E-9	40.500004	1
ATAGGCG	45	1.9266736E-8	40.0	1
TGCGACG	45	1.9266736E-8	40.0	1
TCAACGG	90	0.0	40.0	2