SRR3554115_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554115_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	849209
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5056	0.5953775807840002	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1659	0.19535826869475006	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	1146	0.13494911146725955	TruSeq Adapter, Index 21 (95% over 22bp)
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1067	0.12564633676750953	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1001	0.11787439841075635	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	909	0.10704078736800952	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	874	0.10291930490609497	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTT	25	3.8899423E-5	45.0	44
ATTCACG	20	7.0322456E-4	45.0	1
CATAGCG	40	6.8121153E-9	45.0	1
ACGCTAG	25	3.8899423E-5	45.0	1
CCGTTAA	20	7.0322456E-4	45.0	43
AATCGAG	20	7.0322456E-4	45.0	1
TGCGTAT	20	7.0322456E-4	45.0	43
ATCGTAC	30	2.1648302E-6	44.999996	45
ATTCCCG	30	2.1648302E-6	44.999996	1
CGTACAC	30	2.1648302E-6	44.999996	36
CTCGATA	30	2.1648302E-6	44.999996	24
AGTTACG	30	2.1648302E-6	44.999996	1
GCCCGTA	30	2.1648302E-6	44.999996	12
TTACCGG	135	0.0	41.666664	2
ACTACCG	55	6.002665E-11	40.909092	1
TAGTACG	45	1.9272193E-8	40.0	1
GTAGGGA	350	0.0	39.857143	4
TATGGGC	130	0.0	39.80769	4
TGCGAAG	130	0.0	39.80769	1
CGCATAG	40	3.4568075E-7	39.375	1