SRR3554113_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554113_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	837300
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3429	0.40953063418129704	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1517	0.18117759464946853	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1459	0.17425056729965363	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1204	0.14379553326167444	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	1099	0.13125522512838886	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	980	0.11704287591066524	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	896	0.1070106294040368	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATTAG	35	1.2113924E-7	45.000004	1
CTATCGG	50	2.1827873E-11	45.0	2
CCGATAG	20	7.032189E-4	45.0	1
CGTTGTA	20	7.032189E-4	45.0	21
CGCGAAG	20	7.032189E-4	45.0	1
TCTACCG	25	3.8898947E-5	45.0	1
ATTCACG	20	7.032189E-4	45.0	1
ACGTCTG	20	7.032189E-4	45.0	1
TTACGCG	25	3.8898947E-5	45.0	1
CACGTTA	25	3.8898947E-5	45.0	25
ATACGTT	20	7.032189E-4	45.0	25
TAATGCG	40	6.8121153E-9	45.0	1
CCGTTGC	20	7.032189E-4	45.0	31
ATCGCGT	20	7.032189E-4	45.0	20
AAATGCG	25	3.8898947E-5	45.0	1
AGCCCGT	30	2.1647938E-6	44.999996	41
ATACCCG	30	2.1647938E-6	44.999996	1
TACAACG	55	6.002665E-11	40.909092	1
TTAACGG	105	0.0	40.714287	2
ACAATCG	50	1.0804797E-9	40.5	1