SRR3554108_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554108_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	857840
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4886	0.5695700829991607	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1268	0.14781311200223818	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1219	0.14210109111256178	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1051	0.12251701949081413	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	945	0.11016040287233052	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	901	0.10503124125711089	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCG	50	2.1827873E-11	45.0	1
TAGCGAT	20	7.032286E-4	45.0	26
GAATACG	20	7.032286E-4	45.0	1
CCGTAAG	20	7.032286E-4	45.0	41
GCGATAC	20	7.032286E-4	45.0	9
ACTCGAC	20	7.032286E-4	45.0	42
GACGAAT	25	3.8899758E-5	45.0	9
ATACCCG	20	7.032286E-4	45.0	20
TACGTAG	25	3.8899758E-5	45.0	1
CGTAATG	30	2.1648557E-6	44.999996	1
AATTACG	30	2.1648557E-6	44.999996	1
ACCCACG	30	2.1648557E-6	44.999996	1
CGAACAG	105	0.0	42.857143	1
ATTACGG	95	0.0	42.63158	2
AATACGG	85	0.0	42.35294	2
TCGCATA	75	0.0	42.000004	10
CGACACG	65	0.0	41.538464	1
TAAGGCG	60	3.6379788E-12	41.249996	1
TAGAACG	50	1.0804797E-9	40.5	1
ATACGCG	45	1.9274012E-8	40.0	1