SRR3554107_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554107_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	838637
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4690	0.5592407680557857	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1236	0.14738200198655677	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1211	0.14440097443828498	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	961	0.11459069895556719	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	893	0.10648230402426795	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	871	0.1038589997817888	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGAACG	35	1.2114106E-7	45.000004	1
TCGCACT	20	7.032195E-4	45.0	24
CGAGTTA	20	7.032195E-4	45.0	44
CGCATTA	20	7.032195E-4	45.0	36
ACCGACG	40	6.8121153E-9	45.0	1
CACGATT	25	3.889901E-5	45.0	16
ATCGTAA	20	7.032195E-4	45.0	24
CATAGCG	45	3.8380676E-10	45.0	1
GAACGAT	25	3.889901E-5	45.0	27
CGGTCTA	20	7.032195E-4	45.0	31
TCGAAAT	20	7.032195E-4	45.0	16
GTACGTA	20	7.032195E-4	45.0	25
CGCTTAA	25	3.889901E-5	45.0	20
CGAATAG	30	2.1647975E-6	44.999996	1
ATTTCGC	30	2.1647975E-6	44.999996	19
ATTGCGG	65	0.0	41.538464	2
TCGCATA	55	6.002665E-11	40.909092	10
TAACACG	55	6.002665E-11	40.909092	1
TTAACGG	110	0.0	40.909092	2
CTTAACG	45	1.9272193E-8	40.0	1