SRR3554106_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554106_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	833773
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4641	0.5566263239514831	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1187	0.14236488828494087	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	927	0.11118134072463368	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	913	0.10950222662523253	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	851	0.10206614989931313	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATCCG	30	2.164781E-6	45.000004	1
CGAGTAC	20	7.032171E-4	45.0	26
ACCGCGT	20	7.032171E-4	45.0	24
CATGACG	25	3.8898816E-5	45.0	1
TAACGCA	25	3.8898816E-5	45.0	39
TCTACCG	35	1.2113924E-7	45.0	1
CGAATCA	25	3.8898816E-5	45.0	12
CATAACG	40	6.8102963E-9	45.0	1
TAGATCG	20	7.032171E-4	45.0	1
CCGAACT	20	7.032171E-4	45.0	12
CGCGTAG	20	7.032171E-4	45.0	1
CAATACG	20	7.032171E-4	45.0	1
TAAGACG	20	7.032171E-4	45.0	1
CGATAGA	20	7.032171E-4	45.0	43
CCGCATT	20	7.032171E-4	45.0	23
GCGTAAT	20	7.032171E-4	45.0	25
GCGTAAC	20	7.032171E-4	45.0	32
TACGTAG	20	7.032171E-4	45.0	1
TACCGCG	70	0.0	45.0	1
TATCCCG	40	6.8102963E-9	45.0	1