SRR3554105_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554105_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	816453
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4435	0.5432033442218964	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1227	0.15028421721764756	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	938	0.11488720110036954	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	918	0.11243758060782434	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	880	0.10778330167198846	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTT	20	7.032084E-4	45.000004	27
AATTTCG	20	7.032084E-4	45.000004	39
CGTATAT	20	7.032084E-4	45.000004	30
CGAAACG	20	7.032084E-4	45.000004	1
ACGTTAG	30	2.1647265E-6	45.000004	1
CGACACG	30	2.1647265E-6	45.000004	1
ACGATAG	30	2.1647265E-6	45.000004	1
CGTACAG	30	2.1647265E-6	45.000004	1
CCGACGG	60	0.0	45.000004	2
TATAGCG	20	7.032084E-4	45.000004	1
GCGTAAA	20	7.032084E-4	45.000004	1
ACGCATT	25	3.88981E-5	45.0	40
TACGCAT	25	3.88981E-5	45.0	39
TAAACGG	105	0.0	42.857143	2
GTTACGG	85	0.0	42.35294	2
AAGGGCG	160	0.0	42.187504	5
AATTGCG	65	0.0	41.53846	1
CGTAAGG	120	0.0	41.250004	2
TATACGG	60	3.6379788E-12	41.250004	2
TAACACG	55	6.002665E-11	40.909092	1