SRR3554098_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554098_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1053773
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGCT	3101	0.2942759019257468	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1661	0.15762408032849579	No Hit
AATCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCT	1460	0.13854976356387952	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCC	1090	0.1034378371812525	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTC	20	7.033018E-4	45.000004	6
TCTTGCG	40	6.8139343E-9	45.000004	1
TACCCGT	20	7.033018E-4	45.000004	10
TTATACG	30	2.1653286E-6	45.000004	1
TCTCGCG	65	0.0	45.000004	1
GCGATAG	30	2.1653286E-6	45.000004	1
CGTACCG	40	6.8139343E-9	45.000004	1
CCGAACG	30	2.1653286E-6	45.000004	1
GCTCGCG	20	7.033018E-4	45.000004	1
ATACCCG	30	2.1653286E-6	45.000004	1
CTATGCG	25	3.8905844E-5	45.0	1
TAATACG	25	3.8905844E-5	45.0	1
CGTCTAC	25	3.8905844E-5	45.0	38
CGATTAG	55	1.8189894E-12	45.0	1
TAACGCG	45	3.8562575E-10	45.0	1
TCTACGA	25	3.8905844E-5	45.0	40
ACGTCTA	25	3.8905844E-5	45.0	37
CTCGACG	45	3.8562575E-10	45.0	1
CAATGCG	25	3.8905844E-5	45.0	1
CCACGCG	55	1.8189894E-12	45.0	1