SRR3554095_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554095_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1474437
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCTGCT	5632	0.3819763068886633	TruSeq Adapter, Index 16 (95% over 22bp)
AATCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCT	4013	0.27217168315770696	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCC	3113	0.21113143525291347	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGT	2652	0.1798652638261248	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAACG	40	6.8175723E-9	45.000004	1
AACCGCG	40	6.8175723E-9	45.000004	1
CGTATAG	20	7.0339354E-4	45.000004	1
ATCCGTC	20	7.0339354E-4	45.000004	15
ACGTCGG	40	6.8175723E-9	45.000004	2
CGCGTAG	20	7.0339354E-4	45.000004	1
TTACCGT	20	7.0339354E-4	45.000004	28
CGTCCGA	20	7.0339354E-4	45.000004	39
CGTCCCG	20	7.0339354E-4	45.000004	1
ATACCCG	40	6.8175723E-9	45.000004	1
TCAACGA	20	7.0339354E-4	45.000004	19
ATCGACG	40	6.8175723E-9	45.000004	1
CGACGGA	35	1.2122473E-7	45.0	3
TGTGACG	25	3.8913444E-5	45.0	1
TGCGACG	25	3.8913444E-5	45.0	1
GAACGTA	35	1.2122473E-7	45.0	9
ACGTCCG	25	3.8913444E-5	45.0	1
CGTAACG	35	1.2122473E-7	45.0	1
CGCGGAC	30	2.1659216E-6	44.999996	4
TAGCCCG	30	2.1659216E-6	44.999996	1