SRR3554092_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554092_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	839936
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGCT	4422	0.5264686833282536	Illumina PCR Primer Index 7 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC	1034	0.12310461749466625	Illumina PCR Primer Index 7 (95% over 22bp)
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	949	0.11298479884181653	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACCG	95	0.0	45.000004	1
TTCGTTA	70	0.0	45.000004	20
ACGTCCG	35	1.2114106E-7	45.000004	1
TACTACG	70	0.0	45.000004	1
CGGGTCG	25	3.8899052E-5	45.0	18
AGCCGAC	25	3.8899052E-5	45.0	10
TCGCACG	40	6.8121153E-9	45.0	1
CGAGTTA	25	3.8899052E-5	45.0	32
CATTGCG	20	7.032201E-4	45.0	1
TCGGGTA	25	3.8899052E-5	45.0	5
CGCGAAG	20	7.032201E-4	45.0	1
TGCGGCG	25	3.8899052E-5	45.0	17
CCGCTAG	20	7.032201E-4	45.0	1
TTATCCG	20	7.032201E-4	45.0	1
CGTTAAG	25	3.8899052E-5	45.0	1
CACTCCG	75	0.0	45.0	1
ACGGCAC	20	7.032201E-4	45.0	39
GTTCGCA	20	7.032201E-4	45.0	28
CACTACG	40	6.8121153E-9	45.0	1
TACGAAG	20	7.032201E-4	45.0	1