SRR3554091_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554091_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	850237
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGCT	4565	0.5369091206334233	Illumina PCR Primer Index 7 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC	992	0.11667335107740547	Illumina PCR Primer Index 7 (95% over 22bp)
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	974	0.11455629430382352	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGT	20	7.0322497E-4	45.0	38
AACCGAA	35	1.2114288E-7	45.0	29
TTGGCCG	25	3.889946E-5	45.0	26
CTCAACG	50	2.1827873E-11	45.0	1
TTTACCG	20	7.0322497E-4	45.0	1
CGAAACG	55	1.8189894E-12	45.0	1
CGTGCAC	20	7.0322497E-4	45.0	18
TTTCGCG	20	7.0322497E-4	45.0	1
TAGCGCG	45	3.8380676E-10	45.0	1
TTCCGCA	40	6.8121153E-9	45.0	34
CCGTCAG	35	1.2114288E-7	45.0	1
ATCCGCG	25	3.889946E-5	45.0	1
CACTCCG	95	0.0	45.0	1
CGCTCGT	20	7.0322497E-4	45.0	45
CGCTACG	25	3.889946E-5	45.0	1
TCGCTAT	20	7.0322497E-4	45.0	19
ACGTGCG	20	7.0322497E-4	45.0	1
AGCGACG	20	7.0322497E-4	45.0	1
CGTACCG	40	6.8121153E-9	45.0	1
TTACGTC	20	7.0322497E-4	45.0	34