SRR3554090_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554090_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1218909
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGCT	4892	0.4013425120333019	No Hit
AATCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCT	1979	0.16235830566514808	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCC	1810	0.14849344782916526	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGT	1598	0.13110084510000336	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1543	0.12658861325989063	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGCA	20	7.033454E-4	45.000004	9
TTCGTAA	20	7.033454E-4	45.000004	31
TAACGCG	85	0.0	45.000004	1
CGTTCCG	20	7.033454E-4	45.000004	1
ATCGTAG	20	7.033454E-4	45.000004	1
CATACCG	40	6.8157533E-9	45.000004	1
TAGGCGT	20	7.033454E-4	45.000004	30
CGACTCG	20	7.033454E-4	45.000004	1
CGACTAG	40	6.8157533E-9	45.000004	1
ATCGCGC	20	7.033454E-4	45.000004	1
ACGACCG	20	7.033454E-4	45.000004	1
TGCGTGA	20	7.033454E-4	45.000004	31
CGAACCG	50	2.1827873E-11	45.0	1
GTATTCG	25	3.890945E-5	45.0	28
GATCGCG	25	3.890945E-5	45.0	13
ATACGCA	35	1.2120108E-7	45.0	16
TCGAACG	25	3.890945E-5	45.0	1
CAATGCG	30	2.1656106E-6	44.999996	1
CGCAATG	140	0.0	43.392857	1
TATACGG	125	0.0	43.199997	2