SRR3554089_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554089_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1232414
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGCT	4887	0.3965388254271698	No Hit
AATCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCT	1947	0.1579826259682217	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCC	1651	0.13396472289344327	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1613	0.13088134344465416	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGT	1554	0.12609399114258685	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGCG	65	0.0	45.000004	1
CGTTACG	30	2.1656306E-6	45.000004	1
CTTCGCG	20	7.0334855E-4	45.0	1
CGTATAG	25	3.8909708E-5	45.0	1
TTTCGCG	25	3.8909708E-5	45.0	1
CAATGCG	40	6.8157533E-9	45.0	1
CCGAACG	70	0.0	45.0	1
TTGCACG	35	1.212029E-7	45.0	1
TAGTGCG	35	1.212029E-7	45.0	1
TATCGCG	35	1.212029E-7	45.0	1
GCGTACG	25	3.8909708E-5	45.0	1
TCGAACG	45	3.8562575E-10	45.0	1
TACCGCG	35	1.212029E-7	45.0	1
TCACGCG	110	0.0	42.954544	1
ACCGCGC	100	0.0	42.75	35
CGTAGCG	90	0.0	42.5	1
TATAGCG	75	0.0	42.0	1
ACACGAC	220	0.0	41.93182	26
ATTACCG	65	0.0	41.538464	1
CTCGATC	65	0.0	41.538464	16