SRR3554087_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554087_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1186587
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGCT	4596	0.38732937407876544	Illumina Single End Adapter 2 (95% over 21bp)
AATCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCT	1540	0.12978399392543488	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTAGCG	90	0.0	45.000004	1
CGCGACG	55	1.8189894E-12	45.000004	1
TTATCCG	45	3.8562575E-10	45.000004	1
TTCTACG	40	6.8157533E-9	45.0	1
GGTCGAC	20	7.0333795E-4	45.0	8
CGTGCCG	25	3.8908824E-5	45.0	1
GCGAAGT	20	7.0333795E-4	45.0	35
CGTCTAG	25	3.8908824E-5	45.0	1
CGCTACA	20	7.0333795E-4	45.0	31
AACGCCG	25	3.8908824E-5	45.0	1
ACGTGCG	35	1.2119744E-7	45.0	1
GCTAGCG	50	2.1827873E-11	45.0	1
CCGAACG	35	1.2119744E-7	45.0	1
CGATAGT	20	7.0333795E-4	45.0	41
ATCGCCC	20	7.0333795E-4	45.0	10
CGCCAAT	20	7.0333795E-4	45.0	13
AAACGCG	105	0.0	42.857143	1
TAAACCG	100	0.0	42.75	1
CGACAAG	85	0.0	42.352943	1
ATACGCG	65	0.0	41.538464	1