SRR3554086_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554086_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	880682
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTCTGCT	3908	0.4437470051619086	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTCT	1407	0.15976254766192566	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCC	1207	0.13705287493101936	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGT	1180	0.13398706911234703	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	45	3.8380676E-10	45.0	1
CGAGTCC	20	7.032388E-4	45.0	13
CGTTGCG	40	6.8121153E-9	45.0	1
CCGGACC	20	7.032388E-4	45.0	5
TAACGCG	75	0.0	45.0	1
GTTACGG	110	0.0	45.0	2
ACGATAG	20	7.032388E-4	45.0	1
CCGTAAC	25	3.8900605E-5	45.0	23
CGCTCAG	45	3.8380676E-10	45.0	1
TATCTCG	45	3.8380676E-10	45.0	1
TCGTCCA	20	7.032388E-4	45.0	28
CTTGACG	20	7.032388E-4	45.0	1
TTGCGAA	25	3.8900605E-5	45.0	24
ATAAGCG	25	3.8900605E-5	45.0	1
AGCGAAT	20	7.032388E-4	45.0	35
TCGTAAG	25	3.8900605E-5	45.0	1
CATAACG	55	1.8189894E-12	45.0	1
ATGCGAT	25	3.8900605E-5	45.0	12
ATACGAG	20	7.032388E-4	45.0	1
TATCGTC	20	7.032388E-4	45.0	15