SRR3554085_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554085_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	893898
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTCTGCT	3880	0.4340539972122099	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCC	1246	0.13938950529031277	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTCT	1218	0.13625715685682258	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGT	1142	0.127755068251635	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATCG	20	7.032443E-4	45.000004	1
TCCGCTC	20	7.032443E-4	45.000004	23
GATCGCG	20	7.032443E-4	45.000004	9
CCGATAG	20	7.032443E-4	45.000004	1
CGGTTGC	20	7.032443E-4	45.000004	31
GCCGGTT	20	7.032443E-4	45.000004	28
TTCCGCG	20	7.032443E-4	45.000004	1
CGACACT	20	7.032443E-4	45.000004	29
TAACGCG	65	0.0	45.000004	1
TCGGATC	20	7.032443E-4	45.000004	24
ACGATAG	20	7.032443E-4	45.000004	1
CGCTCCG	20	7.032443E-4	45.000004	1
CCGACCG	20	7.032443E-4	45.000004	1
ACCGTAT	20	7.032443E-4	45.000004	26
CGACTCG	40	6.8121153E-9	45.000004	1
TGTACGA	20	7.032443E-4	45.000004	38
TTACCCG	20	7.032443E-4	45.000004	1
CCACGTA	20	7.032443E-4	45.000004	19
TATCGCG	40	6.8121153E-9	45.000004	1
TAGTCCG	20	7.032443E-4	45.000004	1