SRR3554082_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554082_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	716493
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGCT	3524	0.4918401156745425	TruSeq Adapter, Index 15 (95% over 22bp)
AATCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCT	1449	0.20223505323848245	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCC	1264	0.17641484285261685	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGT	1199	0.16734287704136677	No Hit
CCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGC	777	0.10844488362063551	TruSeq Adapter, Index 21 (95% over 22bp)
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	751	0.10481609729613547	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	726	0.10132687967642391	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAA	30	2.1643518E-6	45.000004	39
TTCACCG	30	2.1643518E-6	45.000004	1
CTAGGCG	30	2.1643518E-6	45.000004	1
AACGTTG	20	7.0315064E-4	45.0	17
GCGAATG	35	1.211065E-7	45.0	1
CTATCGT	20	7.0315064E-4	45.0	23
GCGCGAC	20	7.0315064E-4	45.0	9
GTTTACG	20	7.0315064E-4	45.0	42
CGCATCA	20	7.0315064E-4	45.0	20
GGCCGTA	20	7.0315064E-4	45.0	30
TAGCGAG	40	6.8084773E-9	45.0	1
ATTCGGC	20	7.0315064E-4	45.0	10
CCTAACG	20	7.0315064E-4	45.0	1
TCTAGCG	35	1.211065E-7	45.0	1
AACGGTC	35	1.211065E-7	45.0	4
TACGCGG	70	0.0	45.0	2
CGTAGTT	20	7.0315064E-4	45.0	15
CAAATCG	20	7.0315064E-4	45.0	1
TTGCGAT	20	7.0315064E-4	45.0	28
CGTACCG	20	7.0315064E-4	45.0	1