SRR3554078_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554078_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	647466
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGCT	4643	0.7171032919103087	TruSeq Adapter, Index 14 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGC	1079	0.16664967735757552	TruSeq Adapter, Index 21 (95% over 21bp)
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	776	0.11985185322472532	No Hit
AATCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCT	748	0.11552730181970945	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	703	0.10857712991879111	No Hit
AAACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCT	662	0.10224475107573215	No Hit
TACCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCT	653	0.10085471669554849	No Hit
AACCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCT	648	0.10008247537322423	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	30	2.1640262E-6	45.000004	1
CAGCGCG	95	0.0	45.000004	1
CGAACAC	20	7.0310006E-4	45.000004	29
CACGGTT	20	7.0310006E-4	45.000004	25
TTTCGTA	20	7.0310006E-4	45.000004	45
TATGGCG	20	7.0310006E-4	45.000004	1
ATAGCCG	20	7.0310006E-4	45.000004	10
ATTCGCG	40	6.8066583E-9	45.000004	1
TAACGAG	30	2.1640262E-6	45.000004	1
TCGATGG	30	2.1640262E-6	45.000004	2
ATCCGTC	20	7.0310006E-4	45.000004	27
ATCGTAG	20	7.0310006E-4	45.000004	1
CGCCTCA	20	7.0310006E-4	45.000004	39
TACGATT	20	7.0310006E-4	45.000004	25
AATTGCG	20	7.0310006E-4	45.000004	1
ATATACG	30	2.1640262E-6	45.000004	1
GTACTAC	40	6.8066583E-9	45.000004	34
CAGTGCG	40	6.8066583E-9	45.000004	1
GCGATCC	20	7.0310006E-4	45.000004	24
GTATCGG	20	7.0310006E-4	45.000004	2