##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3554075_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 343969 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.63353965037547 31.0 31.0 34.0 30.0 34.0 2 31.830080617730086 33.0 31.0 34.0 30.0 34.0 3 31.98366422555521 33.0 31.0 34.0 30.0 34.0 4 35.604949864668036 37.0 35.0 37.0 33.0 37.0 5 35.41663638292986 37.0 35.0 37.0 33.0 37.0 6 35.399794748945396 37.0 35.0 37.0 33.0 37.0 7 35.439225627890885 37.0 35.0 37.0 33.0 37.0 8 35.73033907125352 37.0 35.0 37.0 35.0 37.0 9 37.35470929066282 39.0 37.0 39.0 34.0 39.0 10 36.85042547438868 39.0 37.0 39.0 32.0 39.0 11 36.90709046454768 39.0 37.0 39.0 33.0 39.0 12 36.86143809471202 39.0 37.0 39.0 33.0 39.0 13 36.80592146385285 39.0 37.0 39.0 33.0 39.0 14 37.91316659350116 40.0 37.0 41.0 33.0 41.0 15 37.94573929627379 40.0 37.0 41.0 33.0 41.0 16 37.86261843363791 40.0 37.0 41.0 33.0 41.0 17 37.86705197270684 40.0 37.0 41.0 33.0 41.0 18 37.77146487038076 39.0 37.0 41.0 33.0 41.0 19 37.75214917623391 39.0 37.0 41.0 32.0 41.0 20 37.714738828208354 39.0 37.0 41.0 33.0 41.0 21 37.74134878433812 39.0 37.0 41.0 33.0 41.0 22 37.703813425047024 39.0 37.0 41.0 33.0 41.0 23 37.590454372341696 39.0 36.0 41.0 32.0 41.0 24 37.49297175036122 39.0 36.0 41.0 32.0 41.0 25 37.519828821783356 39.0 36.0 41.0 32.0 41.0 26 37.46075082347537 39.0 36.0 41.0 32.0 41.0 27 37.340364974750635 39.0 36.0 41.0 32.0 41.0 28 37.38427300134605 39.0 36.0 41.0 32.0 41.0 29 37.16867217685315 39.0 36.0 41.0 31.0 41.0 30 37.10297439594847 39.0 36.0 41.0 31.0 41.0 31 37.09162453593202 39.0 36.0 40.0 31.0 41.0 32 36.891141352854476 39.0 36.0 40.0 31.0 41.0 33 36.873860725821224 39.0 36.0 40.0 31.0 41.0 34 36.86190616014815 39.0 35.0 40.0 31.0 41.0 35 36.766743514677195 39.0 35.0 40.0 30.0 41.0 36 36.762987362233225 39.0 35.0 40.0 30.0 41.0 37 36.59491407655923 39.0 35.0 40.0 30.0 41.0 38 36.539167773840084 39.0 35.0 40.0 30.0 41.0 39 36.37469364971843 39.0 35.0 40.0 30.0 41.0 40 36.38854373504589 39.0 35.0 40.0 30.0 41.0 41 36.52337856027724 39.0 35.0 40.0 30.0 41.0 42 36.45190118876992 39.0 35.0 40.0 30.0 41.0 43 36.40708028921211 39.0 35.0 40.0 30.0 41.0 44 36.304411153330676 39.0 35.0 40.0 30.0 41.0 45 36.080106056069006 38.0 35.0 40.0 28.0 41.0 46 35.80053435047926 38.0 34.0 40.0 28.0 41.0 47 35.787637839456465 38.0 34.0 40.0 28.0 41.0 48 35.815620012268546 38.0 35.0 40.0 28.0 41.0 49 35.6770435707869 38.0 34.0 40.0 28.0 41.0 50 35.546479479255396 38.0 34.0 40.0 28.0 41.0 51 34.23509095296379 37.0 32.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 3.0 14 8.0 15 12.0 16 25.0 17 53.0 18 93.0 19 225.0 20 409.0 21 635.0 22 909.0 23 1203.0 24 1510.0 25 1849.0 26 2275.0 27 2968.0 28 3797.0 29 5081.0 30 6621.0 31 8581.0 32 11310.0 33 15014.0 34 20950.0 35 27171.0 36 33555.0 37 47348.0 38 71821.0 39 80523.0 40 16.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 17.82573429582317 35.332835226430284 19.954995944401965 26.886434533344573 2 21.214121039977442 34.95111478069244 21.001020440795536 22.833743738534576 3 20.58441313025302 31.233919335754095 23.994894888783584 24.186772645209306 4 22.002564184563145 29.34799356918792 20.57481924243173 28.074623003817205 5 17.04921083004573 36.32682014949021 19.485186165032314 27.138782855431735 6 21.49844898813556 33.83299076370254 23.364896255185787 21.30366399297611 7 78.22245609342703 7.574229072968786 8.060319389247287 6.142995444356904 8 79.9150504842006 4.458541322037742 6.331675238175532 9.294732955586115 9 73.28509255194508 9.268277083109233 11.624303352918432 5.822327012027246 10 28.008628684561693 40.23647479860104 15.026063395247826 16.728833121589446 11 19.909061572409144 24.570237434187383 35.85701037012056 19.66369062328291 12 22.72181504728624 24.11554529623309 35.87445380252291 17.288185853957767 13 24.126302079547866 25.61975061706142 30.01607703019749 20.237870273193224 14 17.17218702848222 26.190150856617894 35.15055135782585 21.48711075707404 15 16.026734967395317 30.442278228561293 30.865281464318006 22.66570533972538 16 18.300777104913525 29.256996996822387 30.56147501664394 21.880750881620145 17 18.022845081969596 28.39122130191965 32.18778436428864 21.39814925182211 18 17.618738897982087 26.784390453790895 30.60275780666281 24.994112841564213 19 18.18710407042495 30.947265596608997 33.01809174663996 17.847538586326092 20 20.29310780913396 30.60217635891607 30.398378923682074 18.706336908267897 21 19.332846855385224 29.148266268181146 28.68601530951917 22.832871566914463 22 17.298942637272543 28.110672764115368 31.529585514973736 23.06079908363835 23 20.63877849457364 28.201669336480904 27.05970596187447 24.099846207070986 24 15.962194267506666 31.54935473836305 27.43503048239812 25.05342051173216 25 17.248647407179135 28.726716651791296 28.21504263465603 25.80959330637354 26 22.598257401103005 29.01947559227721 26.5029697443665 21.87929726225328 27 15.803459032645383 29.79396399094104 29.45701502170254 24.945561954711035 28 21.305699060089715 25.31245548290689 28.395291436146863 24.98655402085653 29 22.6014553637101 29.69715294110806 26.33057048745672 21.370821207725115 30 20.58441313025302 30.49984155548901 24.525175233814675 24.390570080443297 31 24.1658405263265 29.825943617011998 22.148507568996042 23.859708287665455 32 21.627530387912863 30.495771421261804 23.29076166747585 24.58593652334949 33 21.64235730545485 30.302440045469215 24.272536187854136 23.782666461221798 34 20.067215359523676 26.596001383845636 24.604542851245313 28.73224040538537 35 21.765042780017968 27.987987289552258 26.514017251554645 23.73295267887513 36 22.49185246344874 28.724390860804316 28.076948794804185 20.70680788094276 37 20.26403542179673 31.87438402879329 24.306260157165326 23.55532039224465 38 22.679660085647253 30.32104637336504 28.233358238678484 18.76593530230922 39 19.18893853806593 28.905221110041897 28.00106986385401 23.904770488038167 40 19.595370513040418 29.854434556602484 26.75095720835308 23.79923772200402 41 18.372295177763114 23.91029424163224 32.36192796443866 25.355482616165993 42 22.523832089519697 25.410138704359987 28.3644747055694 23.701554500550923 43 19.513386380749427 24.940910372737076 30.18033601865284 25.365367227860652 44 21.461527056217275 24.783338033369287 26.630597524776945 27.1245373856365 45 25.09935488372499 25.756972285293152 27.147795295506285 21.99587753547558 46 18.13884390744515 26.793402893865437 32.246219862836476 22.82153333585294 47 20.453005939488733 25.63079812424957 27.292575784445695 26.623620151816006 48 20.120708552224183 23.16255243931866 33.84723623349778 22.869502774959372 49 21.84470112132198 22.31044076646442 30.21057130148356 25.63428681073004 50 19.766897598330083 22.115946495178346 27.385316700051458 30.731839206440114 51 19.5273411266713 22.036578877747704 33.619308716773894 24.8167712788071 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1103.0 1 900.0 2 697.0 3 487.5 4 278.0 5 265.5 6 253.0 7 261.5 8 270.0 9 317.0 10 364.0 11 438.5 12 513.0 13 553.5 14 594.0 15 613.0 16 632.0 17 744.5 18 857.0 19 832.0 20 807.0 21 1031.0 22 1255.0 23 1671.0 24 2087.0 25 2376.0 26 3322.5 27 3980.0 28 4853.0 29 5726.0 30 6349.0 31 6972.0 32 8298.0 33 9624.0 34 10004.5 35 10385.0 36 10710.0 37 11035.0 38 12894.5 39 14754.0 40 15305.5 41 15857.0 42 18225.0 43 20593.0 44 27699.0 45 34805.0 46 37011.0 47 39217.0 48 41414.0 49 43611.0 50 38837.5 51 34064.0 52 28585.0 53 23106.0 54 19963.0 55 16820.0 56 14221.0 57 11622.0 58 10562.5 59 9503.0 60 8035.0 61 6567.0 62 5870.5 63 5174.0 64 4118.0 65 3062.0 66 2457.5 67 1853.0 68 1565.5 69 1278.0 70 1140.0 71 1002.0 72 727.0 73 452.0 74 326.5 75 164.0 76 127.0 77 121.5 78 116.0 79 74.0 80 32.0 81 37.0 82 42.0 83 26.0 84 10.0 85 6.0 86 2.0 87 2.0 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 343969.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.42946440018649 #Duplication Level Percentage of deduplicated Percentage of total 1 72.29511004529925 21.27606367385699 2 12.033376830537685 7.082716700966754 3 4.836075951624178 4.269693751647652 4 2.3822300020398375 2.8043101215235033 5 1.3845429955805444 2.03731793994826 6 0.91569742510891 1.6169090864151057 7 0.6707783416416204 1.3818453128030737 8 0.47884176652751265 1.1273645377075072 9 0.35688206814587514 0.9452563307607563 >10 3.4658547066062244 24.02092566139961 >50 1.017663712525265 20.661779447706 >100 0.14995044880038286 6.441452649222179 >500 0.008997026928022971 2.008191632043416 >1k 0.0039986786346768765 4.326173153999185 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGCT 4908 1.426872770511296 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCC 3556 1.0338140937119333 No Hit AATCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCT 3270 0.9506670659274528 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGT 2971 0.8637406277891322 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 929 0.2700824783628757 No Hit CTGCTAGGGCAAAGGGCAGTCCAGAGTTATAACACAAAAATAATGACTCTG 919 0.2671752396291526 No Hit AAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCT 891 0.25903497117472796 No Hit AATGACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTT 790 0.2296718599641247 No Hit CCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC 742 0.2157171140422538 No Hit AACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTG 685 0.19914585326003217 No Hit AAAAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTT 681 0.19798295776654293 No Hit AATGATCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCT 609 0.17705083888373663 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTAT 580 0.16861984655593962 No Hit ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA 465 0.13518660111812403 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGAGAACTTC 461 0.13402370562463478 No Hit AACCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCT 398 0.11570810160217927 No Hit AAAAAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCT 376 0.10931217638798846 No Hit ACCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTG 371 0.1078585570211269 No Hit TACCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCT 344 0.10000901244007455 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.5829914905122264 0.0 2 0.0 0.0 0.0 2.096119127014353 0.0 3 0.0 0.0 0.0 2.7624582447836867 0.0 4 0.0 0.0 0.0 6.090955871023261 0.0 5 0.0 0.0 0.0 6.487212510429719 0.0 6 0.0 0.0 0.0 8.492916512825284 0.0 7 0.0 0.0 0.0 10.084048271791934 0.0 8 0.0 0.0 0.0 11.216999206323825 0.0 9 0.0 0.0 0.0 13.778567254607246 0.0 10 0.0 0.0 0.0 16.42241015905503 0.0 11 0.0 0.0 0.0 19.76137384473601 0.0 12 0.0 0.0 0.0 21.041431059194288 0.0 13 0.0 0.0 0.0 21.612994194244248 0.0 14 2.907238733723097E-4 0.0 0.0 22.247353685942628 0.0 15 2.907238733723097E-4 0.0 0.0 22.72210577115961 0.0 16 2.907238733723097E-4 0.0 0.0 23.64224683038297 0.0 17 2.907238733723097E-4 0.0 0.0 24.87433460573482 0.0 18 2.907238733723097E-4 0.0 0.0 26.473606633155896 0.0 19 2.907238733723097E-4 0.0 0.0 27.163494384668386 0.0 20 2.907238733723097E-4 0.0 0.0 27.881000904151247 0.0 21 2.907238733723097E-4 0.0 0.0 28.633394288438783 0.0 22 2.907238733723097E-4 0.0 0.0 29.48783175228 0.0 23 2.907238733723097E-4 0.0 0.0 30.27191403876512 0.0 24 2.907238733723097E-4 0.0 0.0 30.85714119586358 0.0 25 2.907238733723097E-4 0.0 0.0 31.35311612383674 0.0 26 2.907238733723097E-4 0.0 0.0 31.80868043341115 0.0 27 2.907238733723097E-4 0.0 0.0 32.32820399512747 0.0 28 2.907238733723097E-4 0.0 0.0 32.84220380324971 0.0 29 2.907238733723097E-4 0.0 0.0 33.3620180888394 0.0 30 2.907238733723097E-4 0.0 0.0 34.06004610880632 0.0 31 2.907238733723097E-4 0.0 0.0 34.61620087856755 0.0 32 2.907238733723097E-4 0.0 0.0 35.1153737691478 0.0 33 2.907238733723097E-4 0.0 0.0 35.621814756562365 0.0 34 2.907238733723097E-4 0.0 0.0 36.063715044088276 0.0 35 2.907238733723097E-4 0.0 0.0 36.57044675537621 0.0 36 2.907238733723097E-4 0.0 0.0 37.07630629504403 0.0 37 2.907238733723097E-4 0.0 0.0 37.58274728245859 0.0 38 2.907238733723097E-4 0.0 0.0 38.04848692760103 0.0 39 2.907238733723097E-4 0.0 0.0 38.50812137140266 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTTC 30 2.1610504E-6 45.000004 36 ACCGGGT 60 0.0 45.000004 4 CGAACAC 35 1.2086093E-7 45.000004 24 ATTAGCG 30 2.1610504E-6 45.000004 1 AATCACG 30 2.1610504E-6 45.000004 1 CATGCGG 35 1.2086093E-7 45.000004 2 CTATCCG 30 2.1610504E-6 45.000004 1 TTTCGAA 35 1.2086093E-7 45.000004 21 AGCTTAG 30 2.1610504E-6 45.000004 1 ATAGCGG 35 1.2086093E-7 45.000004 2 TCCTCGG 35 1.2086093E-7 45.000004 2 TTCCGCG 35 1.2086093E-7 45.000004 40 ACGGGTC 30 2.1610504E-6 45.000004 5 TCTAGCG 35 1.2086093E-7 45.000004 1 TCAGGTA 30 2.1610504E-6 45.000004 12 CATTAGA 30 2.1610504E-6 45.000004 25 GGCCATA 30 2.1610504E-6 45.000004 14 CCACTCA 30 2.1610504E-6 45.000004 43 TACGAAT 35 1.2086093E-7 45.000004 11 TAACACG 30 2.1610504E-6 45.000004 1 >>END_MODULE