SRR3554074_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554074_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	331112
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGCT	953	0.28781801928048517	Illumina Paired End PCR Primer 2 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	621	0.18754983208098772	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGT	25	3.8847695E-5	45.000004	9
ACGCACG	30	2.160803E-6	45.000004	1
ACGGGCG	25	3.8847695E-5	45.000004	5
AGAACCG	30	2.160803E-6	45.000004	1
CTACGCG	25	3.8847695E-5	45.000004	1
GGACGTA	25	3.8847695E-5	45.000004	8
TTAACGG	25	3.8847695E-5	45.000004	2
ACTCGCT	25	3.8847695E-5	45.000004	18
CCGGTTC	30	2.160803E-6	45.000004	28
TATCGTG	25	3.8847695E-5	45.000004	1
TATCGGG	25	3.8847695E-5	45.000004	3
TTAGGCG	20	7.026005E-4	45.0	1
CGAACGG	40	6.7902874E-9	45.0	2
CTCCGCG	20	7.026005E-4	45.0	1
TTTACCG	20	7.026005E-4	45.0	1
CCGATAC	20	7.026005E-4	45.0	24
CGTGACG	20	7.026005E-4	45.0	1
AGCTTCG	20	7.026005E-4	45.0	1
TGCGGGT	20	7.026005E-4	45.0	4
CGACACG	20	7.026005E-4	45.0	1