SRR3554070_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554070_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	564326
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT	1851	0.3280018996112176	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC	671	0.11890290364080336	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT	642	0.11376403001102199	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGT	568	0.10065104212813163	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAA	20	7.030231E-4	45.0	44
CTCGTAA	25	3.8882732E-5	45.0	33
CGAAATA	20	7.030231E-4	45.0	22
CGTGATT	20	7.030231E-4	45.0	17
GACAACG	20	7.030231E-4	45.0	1
GAATCGG	25	3.8882732E-5	45.0	26
ATTCGCC	20	7.030231E-4	45.0	34
CTGCGTT	35	1.2104647E-7	45.0	45
CGTTAAG	35	1.2104647E-7	45.0	1
CTACGTC	20	7.030231E-4	45.0	30
TTGCGTA	20	7.030231E-4	45.0	36
AACGACT	20	7.030231E-4	45.0	26
GTTCACG	20	7.030231E-4	45.0	1
GATTGCC	20	7.030231E-4	45.0	17
TTCGCTA	20	7.030231E-4	45.0	13
CGTCCAA	25	3.8882732E-5	45.0	21
TCGACAA	20	7.030231E-4	45.0	10
CGTCATT	20	7.030231E-4	45.0	22
TATAACG	20	7.030231E-4	45.0	1
GCGTACT	20	7.030231E-4	45.0	38