##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3554070_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 564326 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.071653618653045 33.0 31.0 34.0 30.0 34.0 2 32.2644552971155 34.0 31.0 34.0 30.0 34.0 3 32.38401030609967 34.0 31.0 34.0 30.0 34.0 4 35.98458160708527 37.0 35.0 37.0 35.0 37.0 5 35.79703221187753 37.0 35.0 37.0 35.0 37.0 6 35.79076101402381 37.0 35.0 37.0 35.0 37.0 7 35.739570744569626 37.0 35.0 37.0 35.0 37.0 8 35.91899540336614 37.0 35.0 37.0 35.0 37.0 9 37.54791379450885 39.0 37.0 39.0 35.0 39.0 10 37.193508716592895 39.0 37.0 39.0 34.0 39.0 11 37.15809656120753 39.0 37.0 39.0 34.0 39.0 12 37.03965438416802 39.0 37.0 39.0 33.0 39.0 13 36.97966423662918 39.0 37.0 39.0 33.0 39.0 14 38.21378954717663 40.0 37.0 41.0 33.0 41.0 15 38.20909013584347 40.0 37.0 41.0 33.0 41.0 16 38.132341944195375 40.0 37.0 41.0 33.0 41.0 17 38.14683356783136 40.0 37.0 41.0 33.0 41.0 18 38.10010525830814 40.0 37.0 41.0 33.0 41.0 19 38.099695920443146 40.0 37.0 41.0 33.0 41.0 20 38.03501876574887 40.0 37.0 41.0 33.0 41.0 21 37.98937670778947 40.0 37.0 41.0 33.0 41.0 22 37.98567671877603 40.0 37.0 41.0 33.0 41.0 23 37.859671537373785 40.0 37.0 41.0 33.0 41.0 24 37.747231210328785 40.0 36.0 41.0 33.0 41.0 25 37.74877818849389 40.0 36.0 41.0 33.0 41.0 26 37.68372359239163 40.0 36.0 41.0 33.0 41.0 27 37.62674588801509 40.0 36.0 41.0 33.0 41.0 28 37.57969684189635 40.0 36.0 41.0 33.0 41.0 29 37.43113909336093 39.0 36.0 41.0 32.0 41.0 30 37.42364342596301 39.0 36.0 41.0 32.0 41.0 31 37.33908591842304 39.0 36.0 41.0 32.0 41.0 32 37.30305001010054 39.0 36.0 41.0 32.0 41.0 33 37.235654568458656 39.0 36.0 41.0 32.0 41.0 34 37.13974901032382 39.0 35.0 41.0 31.0 41.0 35 37.05491683884847 39.0 35.0 41.0 31.0 41.0 36 36.95642057959407 39.0 35.0 41.0 31.0 41.0 37 36.869793346399064 39.0 35.0 41.0 31.0 41.0 38 36.82765281060947 39.0 35.0 41.0 31.0 41.0 39 36.72615119629434 39.0 35.0 41.0 31.0 41.0 40 36.60077153985462 39.0 35.0 40.0 31.0 41.0 41 36.49063307379068 39.0 35.0 40.0 30.0 41.0 42 36.38993064292625 38.0 35.0 40.0 30.0 41.0 43 36.29147868430659 38.0 35.0 40.0 30.0 41.0 44 36.15679589457158 38.0 35.0 40.0 30.0 41.0 45 35.96415369839419 38.0 35.0 40.0 30.0 41.0 46 35.8314750693748 38.0 35.0 40.0 29.0 41.0 47 35.72097511013138 38.0 34.0 40.0 29.0 41.0 48 35.64790209914128 38.0 34.0 40.0 29.0 41.0 49 35.49209499473709 38.0 34.0 40.0 28.0 41.0 50 35.30250777033133 37.0 34.0 40.0 28.0 41.0 51 34.05461736655763 36.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 5.0 11 2.0 12 7.0 13 6.0 14 20.0 15 30.0 16 47.0 17 114.0 18 176.0 19 311.0 20 529.0 21 839.0 22 1164.0 23 1579.0 24 2092.0 25 2653.0 26 3481.0 27 4330.0 28 5573.0 29 7341.0 30 9187.0 31 12526.0 32 16530.0 33 22672.0 34 36276.0 35 43798.0 36 52099.0 37 76263.0 38 117834.0 39 146794.0 40 45.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.90577786598526 31.957060280759702 19.840659476968987 26.296502376286046 2 23.12705776448365 30.0345899356046 20.391404968050384 26.44694733186137 3 21.28326534662589 30.76360118087772 20.92035454683995 27.032778925656448 4 21.190411216211906 30.53394669038818 19.6554828237579 28.620159269642016 5 20.233517505838826 32.41264800842066 17.408731832309694 29.945102653430816 6 22.147304926584987 35.84399797280295 18.77017893912384 23.238518161488216 7 84.29507057977126 5.528010405333088 5.459610225295308 4.717308789600337 8 85.72970233517506 4.399407434709725 4.809454109858486 5.061436120256731 9 77.95051087491981 8.797574451646744 7.920067478726835 5.331847194706605 10 38.179527436269105 31.70206582719917 14.104967695977146 16.013439040554573 11 28.42523647678824 27.376551851234925 24.27940587532738 19.918805796649455 12 28.146142477929427 22.4373854828592 28.565403685104002 20.851068354107376 13 26.560711361872393 23.862093896081344 26.320956326662248 23.256238415384015 14 22.309622452270496 24.73357598267668 28.918213940169334 24.03858762488349 15 22.148545344357697 26.558584931404898 28.70663410865351 22.5862356155839 16 24.93080240853691 25.730517466854263 27.093736599057994 22.244943525550834 17 24.653126029989757 25.94581855168821 26.138437711535527 23.262617706786504 18 24.746688970559568 25.52017805311115 26.278782122390247 23.454350853939037 19 24.268242115373027 28.624057725499092 25.38904817428224 21.71865198484564 20 25.085854630125144 26.674120986805498 25.6257907663301 22.61423361673926 21 25.989055971193952 26.659590378610943 25.342621109075253 22.008732541119848 22 24.733930387754597 25.354848084263352 26.053380492835704 23.85784103514635 23 25.766666784801696 25.871570687864814 24.18371650429007 24.178046023043418 24 23.288489277474365 26.08846659554938 26.185396384359393 24.437647742616857 25 22.95889255501253 27.154871474998494 24.692819398716345 25.193416571272632 26 24.579586976322197 26.47352771270507 24.788331567214694 24.15855374375804 27 23.534978009164913 25.529924192753832 25.4769406336054 25.458157164475853 28 23.6923338637596 26.409025988524366 26.662071214156356 23.236568933559678 29 24.81526635313631 26.47317330762715 25.31976198154967 23.39179835768687 30 24.830682974025652 25.524608116585096 25.61533581653158 24.029373092857675 31 25.805828545911407 26.87170181774364 23.96487136867697 23.357598267667978 32 25.64971310908943 26.299514819448333 23.892572732782117 24.158199338680124 33 25.03145345066504 24.84840322792145 26.517651144905603 23.602492176507905 34 23.713775370973515 26.809149321491475 26.13188121759409 23.34519408994092 35 24.712843285618597 26.51463870174332 27.05457483794828 21.717943174689808 36 25.115801859209043 28.027771181905493 25.072741642242253 21.78368531664322 37 26.496032435152735 27.29893713917133 23.83888036347785 22.36615006219809 38 26.121603470334527 27.008502177819203 25.057502223891863 21.812392127954407 39 24.695654639339672 24.591105141354465 26.392900557479187 24.320339661826676 40 25.0139103993082 24.54609569645914 26.095377494568744 24.344616409663917 41 23.631376190358054 24.287025584502576 27.654759837398952 24.426838387740418 42 25.496432912890775 24.97634346104911 25.770033633041894 23.757189993018223 43 23.763392081881747 24.858326570103095 26.083504924458556 25.2947764235566 44 24.89128624234928 24.07278771490238 25.988169958499164 25.047756084249173 45 25.343861526847956 23.769771373284236 26.71363715299313 24.17272994687468 46 22.316887756367773 25.259158713226043 28.591098053252907 23.832855477153277 47 23.54153450310636 24.542020038063107 27.506086907213206 24.41035855161733 48 24.265052469671787 24.047802156909302 27.756296892221872 23.93084848119704 49 24.71603293131984 24.119923590265202 26.30500809815603 24.859035380258927 50 23.124754131477196 24.051346207688464 26.816591828127713 26.007307832706626 51 23.825590173056 22.81677611876823 28.581529116149174 24.77610459202659 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 754.0 1 643.5 2 533.0 3 392.5 4 252.0 5 246.0 6 240.0 7 275.0 8 310.0 9 340.0 10 370.0 11 454.5 12 539.0 13 649.5 14 760.0 15 717.5 16 675.0 17 730.0 18 785.0 19 921.0 20 1057.0 21 1114.0 22 1171.0 23 1736.0 24 2301.0 25 2664.5 26 3785.5 27 4543.0 28 5265.5 29 5988.0 30 7179.0 31 8370.0 32 9643.5 33 10917.0 34 11530.5 35 12144.0 36 13829.0 37 15514.0 38 17680.5 39 19847.0 40 20991.5 41 22136.0 42 24102.5 43 26069.0 44 29090.0 45 32111.0 46 36623.0 47 41135.0 48 44822.0 49 48509.0 50 48478.0 51 48447.0 52 44158.0 53 39869.0 54 37422.0 55 34975.0 56 33842.5 57 32710.0 58 32005.0 59 31300.0 60 29759.0 61 28218.0 62 25392.0 63 22566.0 64 20328.5 65 18091.0 66 16783.5 67 15476.0 68 12989.0 69 10502.0 70 8988.0 71 7474.0 72 6764.0 73 6054.0 74 4912.0 75 2855.0 76 1940.0 77 1644.5 78 1349.0 79 1013.5 80 678.0 81 521.5 82 365.0 83 277.0 84 189.0 85 186.0 86 183.0 87 113.5 88 44.0 89 35.0 90 26.0 91 21.0 92 16.0 93 19.5 94 23.0 95 13.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 564326.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.065047509974054 #Duplication Level Percentage of deduplicated Percentage of total 1 75.3780956137746 20.401117389981763 2 9.793173516930679 5.301054130182971 3 3.3363015954983024 2.708914835692914 4 1.6255071962093037 1.7597771797283808 5 0.9343380713596521 1.2643952145863255 6 0.7065882058099187 1.1474306016139664 7 0.489399195455975 0.9271928733451328 8 0.3965946330584667 0.8587082068742502 9 0.3398169220296717 0.8277445025483592 >10 5.609366453379037 38.33081993570859 >50 1.3198651678588948 23.062965150606416 >100 0.06766854768017232 2.649560492727236 >500 0.002627904764278536 0.43119147673736985 >1k 6.56976191069634E-4 0.3291280096663388 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT 1851 0.3280018996112176 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC 671 0.11890290364080336 No Hit AATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT 642 0.11376403001102199 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGT 568 0.10065104212813163 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3843523069998547 0.0 2 0.0 0.0 0.0 0.5647444916590765 0.0 3 0.0 0.0 0.0 0.7734890825515748 0.0 4 0.0 0.0 0.0 1.7546595407619001 0.0 5 0.0 0.0 0.0 1.9155594461357441 0.0 6 0.0 0.0 0.0 2.883971321541095 0.0 7 0.0 0.0 0.0 3.5894146291328064 0.0 8 0.0 0.0 0.0 4.230710617621729 0.0 9 0.0 0.0 0.0 5.099357463593738 0.0 10 0.0 0.0 0.0 6.452653253615818 0.0 11 0.0 0.0 0.0 7.699981925341026 0.0 12 0.0 0.0 0.0 8.270396898246759 0.0 13 0.0 0.0 0.0 8.535137491449978 0.0 14 0.0 0.0 0.0 8.839748655918742 0.0 15 0.0 0.0 0.0 9.098287160258431 0.0 16 0.0 0.0 0.0 9.55245726760773 0.0 17 0.0 0.0 0.0 10.108518834857867 0.0 18 0.0 0.0 0.0 10.77515478641778 0.0 19 0.0 0.0 0.0 11.115029256139183 0.0 20 0.0 0.0 0.0 11.50788728500902 0.0 21 0.0 0.0 0.0 11.92431325156027 0.0 22 0.0 0.0 0.0 12.398684448350776 0.0 23 0.0 0.0 0.0 12.844348833830091 0.0 24 0.0 0.0 0.0 13.193260633038351 0.0 25 0.0 0.0 0.0 13.498935012740862 0.0 26 0.0 0.0 0.0 13.801065341664215 0.0 27 0.0 0.0 0.0 14.1494455332556 0.0 28 0.0 0.0 0.0 14.462208014516431 0.0 29 0.0 0.0 0.0 14.76823679929686 0.0 30 0.0 0.0 0.0 15.19157366486747 0.0 31 0.0 0.0 0.0 15.519752767017646 0.0 32 0.0 0.0 0.0 15.84810907170678 0.0 33 0.0 0.0 0.0 16.172566920538838 0.0 34 0.0 0.0 0.0 16.47452004692323 0.0 35 0.0 0.0 0.0 16.815457731878382 0.0 36 0.0 0.0 0.0 17.125562175054846 0.0 37 0.0 0.0 0.0 17.472524746334564 0.0 38 3.5440507791595637E-4 0.0 0.0 17.825689406477817 0.0 39 3.5440507791595637E-4 0.0 0.0 18.173892395530242 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGAA 20 7.030231E-4 45.0 44 CTCGTAA 25 3.8882732E-5 45.0 33 CGAAATA 20 7.030231E-4 45.0 22 CGTGATT 20 7.030231E-4 45.0 17 GACAACG 20 7.030231E-4 45.0 1 GAATCGG 25 3.8882732E-5 45.0 26 ATTCGCC 20 7.030231E-4 45.0 34 CTGCGTT 35 1.2104647E-7 45.0 45 CGTTAAG 35 1.2104647E-7 45.0 1 CTACGTC 20 7.030231E-4 45.0 30 TTGCGTA 20 7.030231E-4 45.0 36 AACGACT 20 7.030231E-4 45.0 26 GTTCACG 20 7.030231E-4 45.0 1 GATTGCC 20 7.030231E-4 45.0 17 TTCGCTA 20 7.030231E-4 45.0 13 CGTCCAA 25 3.8882732E-5 45.0 21 TCGACAA 20 7.030231E-4 45.0 10 CGTCATT 20 7.030231E-4 45.0 22 TATAACG 20 7.030231E-4 45.0 1 GCGTACT 20 7.030231E-4 45.0 38 >>END_MODULE