SRR3554068_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554068_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1030208
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCT	9148	0.8879760203764677	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCC	8384	0.8138162390507547	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGT	7245	0.7032560414984158	No Hit
CTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGCT	3931	0.38157342983164566	Illumina Single End Adapter 2 (95% over 21bp)
AATGACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTT	1981	0.19229126545319003	No Hit
AACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTG	1943	0.18860268994222526	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCT	1702	0.16520935578058024	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTAT	1196	0.1160930608187861	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAACGTTGGTC	1094	0.10619214760514382	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATAT	20	7.032944E-4	45.000004	38
CGTACGT	20	7.032944E-4	45.000004	12
TATAGCG	20	7.032944E-4	45.000004	1
GTGCGAA	20	7.032944E-4	45.000004	16
CAATACG	20	7.032944E-4	45.000004	1
ATTCGCG	55	1.8189894E-12	45.0	1
ATATACG	35	1.2117562E-7	45.0	1
ACTACCG	55	1.8189894E-12	45.0	1
TAATCCG	90	0.0	45.0	1
TATCGCG	70	0.0	41.785713	1
CATACCG	60	3.6379788E-12	41.249996	1
TTACCGG	110	0.0	40.909092	2
TATCTCG	50	1.0804797E-9	40.5	1
TACGGCT	1020	0.0	40.14706	6
TGCGATG	45	1.9279469E-8	40.0	1
ATTACGG	130	0.0	39.807693	2
TAAACGG	160	0.0	39.375004	2
ATGTACG	80	0.0	39.375004	1
AATTGCG	40	3.4577533E-7	39.375004	1
TTACGCG	80	0.0	39.375004	1