SRR3554067_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554067_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1039073
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCT	9357	0.9005142083376241	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCC	8255	0.7944581372049895	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGT	7344	0.7067838352069585	No Hit
CTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGCT	4033	0.3881344236641699	Illumina Single End Adapter 2 (95% over 21bp)
AACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTG	2009	0.19334541461475757	No Hit
AATGACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTT	1948	0.18747479724716165	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCT	1714	0.16495472406654776	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTAT	1175	0.11308156404795427	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAACGTTGGTC	1104	0.10624855039058853	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	45	3.8562575E-10	45.000004	1
ATTCGCT	20	7.032972E-4	45.000004	25
TAAATCG	20	7.032972E-4	45.000004	44
GCTCGAA	20	7.032972E-4	45.000004	21
TTCGATA	20	7.032972E-4	45.000004	43
TATCGAG	20	7.032972E-4	45.000004	1
TAATGCG	20	7.032972E-4	45.000004	1
ACGGTAC	20	7.032972E-4	45.000004	13
TAATCCG	60	0.0	45.000004	1
AGCGTAA	25	3.890546E-5	45.0	11
CGGTTTA	25	3.890546E-5	45.0	43
ATACGGT	50	2.1827873E-11	45.0	27
TAATCGC	25	3.890546E-5	45.0	30
TCAACCG	80	0.0	42.187504	1
CATACCG	70	0.0	41.785713	1
TCGTTGA	200	0.0	41.625	24
TCACGCG	65	0.0	41.53846	1
ATATACG	60	3.6379788E-12	41.250004	1
CATAACG	60	3.6379788E-12	41.250004	1
TATCGCG	50	1.0804797E-9	40.5	1