SRR3554065_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554065_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1145247
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGC	1882	0.1643313625794261	Illumina Single End Adapter 1 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGC	1457	0.12722146401605944	Illumina Single End Adapter 1 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCTTGAGAGGTCGTATGCCGTCTTCTGCT	1269	0.11080579123979369	Illumina Single End Adapter 1 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1152	0.10058965445881979	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGCTA	50	2.1827873E-11	45.000004	26
TAATGCG	35	1.2119199E-7	45.000004	1
CCCATCG	25	3.890796E-5	45.000004	11
AACGAAG	40	6.8157533E-9	45.0	1
CATCGAA	20	7.0332765E-4	45.0	14
CAATCGA	20	7.0332765E-4	45.0	43
GTTTACG	55	6.184564E-11	40.909092	1
ACGGGTA	155	0.0	40.645164	5
TCGACGT	50	1.0822987E-9	40.500004	26
CTAGACG	45	1.9283107E-8	40.0	1
CGTAAGG	165	0.0	39.545452	2
CGTTATG	35	6.2482686E-6	38.57143	2
CAAATCG	35	6.2482686E-6	38.57143	37
CGTTTAT	35	6.2482686E-6	38.57143	39
ATTGATC	65	9.094947E-12	38.07692	12
ACACGAC	705	0.0	37.97872	26
CGTGATT	30	1.1399194E-4	37.499996	15
TACGCAT	60	1.5643309E-10	37.499996	16
GTATACG	30	1.1399194E-4	37.499996	1
TACGTAG	30	1.1399194E-4	37.499996	1