SRR3554064_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554064_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	636883
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	1751	0.2749327584501392	No Hit
CTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGCT	1390	0.2182504478844623	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	1370	0.21511015367029737	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1110	0.17428632888615336	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	1105	0.17350125533261213	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1076	0.16894782872207298	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCG	1058	0.16612156392932453	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGC	964	0.1513621811227494	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTC	949	0.1490069604621257	No Hit
ACTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	751	0.11791804774189295	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	723	0.11352163584206205	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCC	701	0.11006731220648064	No Hit
TCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	697	0.10943925336364764	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	690	0.10834015038868991	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	654	0.10268762080319306	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACG	25	3.888839E-5	45.000004	1
GACGTGA	25	3.888839E-5	45.000004	23
GGATCGT	35	1.2107921E-7	45.000004	8
GTTAGCG	45	3.8380676E-10	45.000004	1
CTACGTG	25	3.888839E-5	45.000004	30
CACTAGC	30	2.1639717E-6	45.000004	38
ACGGACT	35	1.2107921E-7	45.000004	5
TCGTAAG	35	1.2107921E-7	45.000004	1
ATGCGTC	25	3.888839E-5	45.000004	1
CGTAAGG	145	0.0	45.000004	2
CTCGAAT	25	3.888839E-5	45.000004	15
CGCAATA	25	3.888839E-5	45.000004	10
TATACGG	30	2.1639717E-6	45.000004	2
TGAGCGT	35	1.2107921E-7	45.000004	15
TCGACAG	25	3.888839E-5	45.000004	1
GCGTACG	30	2.1639717E-6	45.000004	1
TACGTGA	25	3.888839E-5	45.000004	31
TATCCGA	25	3.888839E-5	45.000004	30
CTTCGTA	20	7.0309156E-4	45.0	32
TCGTTTA	40	6.8066583E-9	45.0	38