SRR3554063_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554063_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	687232
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	2405	0.3499546004842615	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	2169	0.31561394114360214	No Hit
CTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGCT	1635	0.23791092382194076	Illumina Single End Adapter 2 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1296	0.18858260383684114	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	1041	0.15147723039672192	No Hit
ACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	853	0.12412111193890855	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	825	0.12004679642391508	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	822	0.1196102626187372	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	820	0.11931924008195195	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	753	0.1095699850996461	No Hit
AAGGGAGTGTTCTGCTGGTCTCCAATTACCAAGAATTCTCCAAAAATTAAT	739	0.10753282734214938	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGCG	30	2.1642227E-6	45.000004	1
CGGTCTA	30	2.1642227E-6	45.000004	31
AACCGTT	25	3.8891623E-5	45.0	29
TCGATAG	20	7.0313044E-4	45.0	1
TCTAGCG	25	3.8891623E-5	45.0	1
GCCGATT	45	3.8380676E-10	45.0	9
CCCGTCA	25	3.8891623E-5	45.0	12
CGTAGTT	20	7.0313044E-4	45.0	26
TACGATT	75	0.0	45.0	11
ACCGTTA	25	3.8891623E-5	45.0	30
GATTACG	25	3.8891623E-5	45.0	1
CGTCAAT	25	3.8891623E-5	45.0	14
GTACGAT	75	0.0	45.0	10
GCTACGA	150	0.0	43.5	10
CGAATAT	145	0.0	43.448273	14
CCGATTT	55	6.002665E-11	40.909092	11
GCACTAG	55	6.002665E-11	40.909092	1
AACGGGA	105	0.0	40.714287	4
GACCTAT	150	0.0	40.5	33
AAGCTAC	145	0.0	40.344826	8