SRR3554062_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554062_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	813240
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC	2645	0.32524224091289167	No Hit
CTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGCT	1665	0.20473660911907923	No Hit
CCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC	1329	0.16342039250405785	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1228	0.15100093453347105	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1185	0.14571344252619153	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1140	0.1401800206581083	No Hit
TCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC	1003	0.12333382519305494	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	883	0.108578033544833	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCTAT	25	3.8897953E-5	45.000004	23
AACGAAG	25	3.8897953E-5	45.000004	36
TCGAGTA	25	3.8897953E-5	45.000004	20
ATAACGG	50	2.1827873E-11	45.000004	2
ATCGAGT	25	3.8897953E-5	45.000004	19
TGCGTAG	35	1.2113378E-7	45.000004	1
AGCGTAA	20	7.0320687E-4	45.0	45
ATTCGCC	20	7.0320687E-4	45.0	11
TAAGTCG	20	7.0320687E-4	45.0	1
TCTAGCG	20	7.0320687E-4	45.0	1
CCGTATT	20	7.0320687E-4	45.0	16
GTATGCG	45	3.8380676E-10	45.0	1
GTGTCGC	20	7.0320687E-4	45.0	14
GTCGTAC	20	7.0320687E-4	45.0	14
CTCGCTA	20	7.0320687E-4	45.0	39
ACTCGAC	20	7.0320687E-4	45.0	11
TATAGCG	20	7.0320687E-4	45.0	1
TCGACCA	20	7.0320687E-4	45.0	13
TAATGCG	20	7.0320687E-4	45.0	1
GTCGGAC	20	7.0320687E-4	45.0	9