SRR3554061_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554061_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1143374
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC	3943	0.3448565386304044	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC	3370	0.294741703064789	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGCT	2421	0.2117417397981763	Illumina Paired End PCR Primer 2 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCG	1880	0.16442563850498612	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1837	0.16066483932641462	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTC	1775	0.15524229167359063	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1614	0.14116115986545086	No Hit
TCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC	1455	0.12725494894933767	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGC	1352	0.11824652300996875	No Hit
ACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC	1169	0.10224126138953658	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAT	25	3.890792E-5	45.000004	18
TATTACG	25	3.890792E-5	45.000004	37
CGTAGTC	20	7.0332724E-4	45.0	18
CCGCGTA	35	1.2119199E-7	45.0	1
TAATGCG	55	1.8189894E-12	45.0	1
ATCGATC	20	7.0332724E-4	45.0	38
CGTAAGG	155	0.0	42.09677	2
CGCATCG	65	0.0	41.53846	21
TCGTTTA	60	3.6379788E-12	41.250004	38
ATTAGCG	50	1.0822987E-9	40.500004	1
GTTAACG	50	1.0822987E-9	40.500004	1
TCGGAAG	90	0.0	40.0	1
CGTATGG	130	0.0	39.80769	2
TAGAACG	40	3.458208E-7	39.375	1
TCTAGCG	80	0.0	39.375	1
CGTTAGG	160	0.0	39.375	2
ACGCATT	110	0.0	38.863636	17
TACGCAT	110	0.0	38.863636	16
CATACGA	105	0.0	38.57143	18
AGGGTAC	610	0.0	37.991802	6