SRR3554059_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554059_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	485303
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGAATGATACCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCC	1168	0.24067438280826617	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	856	0.17638465041427726	No Hit
GCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCTGC	795	0.16381518350391405	Illumina Single End Adapter 2 (95% over 22bp)
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	741	0.15268811443572367	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	586	0.12074930507332533	No Hit
CTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCTGCT	558	0.11497971370463402	Illumina Single End Adapter 2 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	515	0.10611926981700093	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTA	20	7.0292526E-4	45.000004	42
CGGTTAG	20	7.0292526E-4	45.000004	43
TAAACGG	35	1.2099918E-7	45.000004	2
GTGATAA	20	7.0292526E-4	45.000004	9
TGTGCGA	20	7.0292526E-4	45.000004	10
TCGATAG	30	2.1629003E-6	45.000004	1
TATGATC	20	7.0292526E-4	45.000004	35
TACGATT	30	2.1629003E-6	45.000004	11
CGCTAGG	35	1.2099918E-7	45.000004	2
TATTACG	20	7.0292526E-4	45.000004	1
TCGTAAG	35	1.2099918E-7	45.000004	1
CGGTCTA	60	0.0	45.000004	31
CGCACGA	20	7.0292526E-4	45.000004	39
CCTATTA	20	7.0292526E-4	45.000004	38
ATTGACG	20	7.0292526E-4	45.000004	40
CGTTTAC	30	2.1629003E-6	45.000004	33
TTTTACG	45	3.8380676E-10	45.000004	1
CTAATCG	20	7.0292526E-4	45.000004	18
TCACGTC	30	2.1629003E-6	45.000004	38
TAATCGA	20	7.0292526E-4	45.000004	19