SRR3554058_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554058_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	785140
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	1410	0.17958580635300708	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1008	0.1283847466693838	No Hit
CTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGCT	887	0.11297348243625341	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	789	0.10049163206561887	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGT	20	7.031919E-4	45.0	11
GGTACGC	25	3.8896724E-5	45.0	8
CACGCGT	20	7.031919E-4	45.0	40
CGACAAT	40	6.8102963E-9	45.0	20
GTTCGGA	20	7.031919E-4	45.0	31
CGGATTC	25	3.8896724E-5	45.0	20
TCGCTAA	25	3.8896724E-5	45.0	30
CGGTCTA	40	6.8102963E-9	45.0	31
ATAACGG	20	7.031919E-4	45.0	2
CGATCAC	20	7.031919E-4	45.0	29
TCGGTAG	20	7.031919E-4	45.0	2
ATCGATC	20	7.031919E-4	45.0	17
AATCGAT	20	7.031919E-4	45.0	16
TAATCCG	25	3.8896724E-5	45.0	16
AACGTAG	30	2.1646192E-6	44.999996	1
TTGCGTC	30	2.1646192E-6	44.999996	20
CGTACGT	30	2.1646192E-6	44.999996	14
CGTGTTA	30	2.1646192E-6	44.999996	41
TACGCAT	130	0.0	43.26923	16
CGCACGG	85	0.0	42.35294	2