SRR3554057_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554057_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	567466
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	1273	0.22433062068916904	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCG	1253	0.22080618045838868	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGC	1095	0.19296310263522395	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTC	929	0.16371024871974707	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	802	0.14133005325429188	No Hit
CTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGCT	745	0.1312853985965679	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	716	0.12617496026193642	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	680	0.11983096784653179	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	35	1.2104829E-7	45.000004	6
CGTATTT	20	7.0302637E-4	45.000004	29
CTATCGA	20	7.0302637E-4	45.000004	42
GTAGGTC	20	7.0302637E-4	45.000004	4
CCGTACA	20	7.0302637E-4	45.000004	20
ACTCGAT	20	7.0302637E-4	45.000004	33
TACTCGA	35	1.2104829E-7	45.000004	42
ATAGTCG	20	7.0302637E-4	45.000004	37
AGTAGGT	20	7.0302637E-4	45.000004	3
CCGCACG	20	7.0302637E-4	45.000004	37
TACGTAA	20	7.0302637E-4	45.000004	1
TCACGCA	25	3.8883E-5	45.0	35
TAGCCGT	25	3.8883E-5	45.0	44
ATTGACG	25	3.8883E-5	45.0	1
GCGTAAG	55	1.8189894E-12	45.0	1
CGAATAT	85	0.0	42.352943	14
CGACAAT	45	1.9254003E-8	40.0	20
TACGCGG	40	3.4540972E-7	39.375004	2
AAGTTAG	40	3.4540972E-7	39.375004	1
AAGGGTA	180	0.0	38.75	5