SRR3554053_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554053_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	302444
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	915	0.3025353453862533	No Hit
CCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	723	0.23905251881340014	No Hit
CTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGCT	671	0.22185925328325243	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCC	524	0.17325521418841172	No Hit
TCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	460	0.15209427199746067	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTC	315	0.10415151234608722	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	25	3.883966E-5	45.000004	1
CATGCGG	25	3.883966E-5	45.000004	2
CGTTAGG	25	3.883966E-5	45.000004	2
GCGATTA	25	3.883966E-5	45.000004	9
ATAACGG	25	3.883966E-5	45.000004	2
TATCAGT	20	7.0250337E-4	45.0	22
ACGCATT	20	7.0250337E-4	45.0	17
TGAACGG	20	7.0250337E-4	45.0	2
AATGCGG	40	6.7866495E-9	45.0	2
GCCGATA	20	7.0250337E-4	45.0	9
TACGCAT	20	7.0250337E-4	45.0	16
CGCTAGG	20	7.0250337E-4	45.0	2
TATCGTA	20	7.0250337E-4	45.0	28
CGGGCGA	60	3.6379788E-12	41.250004	6
CCCTCGT	55	6.002665E-11	40.909092	14
CGCATGG	55	6.002665E-11	40.909092	2
TCGTGTA	55	6.002665E-11	40.909092	17
CGTGTAC	55	6.002665E-11	40.909092	18
ACAACGA	50	1.0750227E-9	40.500004	13
ATGACGG	50	1.0750227E-9	40.500004	2