SRR3554048_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554048_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	804993
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCG	2619	0.32534444398895396	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTC	2308	0.2867105676695325	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC	2200	0.2732943019380293	No Hit
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	1351	0.1678275463264898	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1093	0.1357775781901209	No Hit
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	1058	0.13142971429565226	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	914	0.11354135998698126	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	875	0.10869659736171618	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATACG	20	7.0320244E-4	45.000004	1
CAATCGA	20	7.0320244E-4	45.000004	28
CGTCACA	20	7.0320244E-4	45.000004	23
GCGAATG	35	1.2113196E-7	45.0	1
ACCGAAC	25	3.889761E-5	45.0	10
TAGTTCG	25	3.889761E-5	45.0	40
TCGACAC	25	3.889761E-5	45.0	34
AGATCGG	50	1.0804797E-9	40.5	2
GCGTACG	50	1.0804797E-9	40.5	1
TTTAACG	40	3.4564982E-7	39.375004	39
TTACGGG	160	0.0	39.375004	3
AATAGCG	35	6.2459585E-6	38.571426	1
AAGGGAT	555	0.0	38.51351	5
GCTACGA	135	0.0	38.333336	10
TTGAGCG	65	9.094947E-12	38.076927	1
TATGCGG	90	0.0	37.5	2
GCATCCG	30	1.139618E-4	37.499996	28
ACGGGCT	250	0.0	36.9	5
GCGATAT	55	2.746674E-9	36.81818	9
GTACGAG	55	2.746674E-9	36.81818	1