##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3554048_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 804993 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.046161892090986 33.0 31.0 34.0 30.0 34.0 2 32.17878540558738 34.0 31.0 34.0 30.0 34.0 3 32.18839542704098 34.0 31.0 34.0 30.0 34.0 4 35.765000440997625 37.0 35.0 37.0 35.0 37.0 5 35.64260310338102 37.0 35.0 37.0 33.0 37.0 6 35.61529354913645 37.0 35.0 37.0 33.0 37.0 7 35.82406679312739 37.0 35.0 37.0 35.0 37.0 8 35.648242903975564 37.0 35.0 37.0 35.0 37.0 9 37.3522800819386 39.0 37.0 39.0 35.0 39.0 10 36.94902191696077 39.0 37.0 39.0 33.0 39.0 11 36.89235682794757 39.0 37.0 39.0 33.0 39.0 12 36.71183848803654 39.0 35.0 39.0 33.0 39.0 13 36.63181667418226 39.0 35.0 39.0 33.0 39.0 14 37.69409920334711 40.0 36.0 41.0 33.0 41.0 15 37.82976994831011 40.0 36.0 41.0 33.0 41.0 16 37.939887676041906 40.0 36.0 41.0 33.0 41.0 17 37.87815670446824 40.0 36.0 41.0 33.0 41.0 18 37.85014279627276 40.0 36.0 41.0 33.0 41.0 19 37.81547292957827 40.0 36.0 41.0 33.0 41.0 20 37.718749107135096 40.0 36.0 41.0 33.0 41.0 21 37.62360293816219 40.0 36.0 41.0 33.0 41.0 22 37.622400443233666 39.0 35.0 41.0 33.0 41.0 23 37.54122209758346 39.0 35.0 41.0 33.0 41.0 24 37.50502178279811 39.0 35.0 41.0 33.0 41.0 25 37.399290428612424 39.0 35.0 41.0 32.0 41.0 26 37.37041688561267 39.0 35.0 41.0 32.0 41.0 27 37.29683612155634 39.0 35.0 41.0 32.0 41.0 28 37.1934911235253 39.0 35.0 41.0 32.0 41.0 29 37.14299006326763 39.0 35.0 41.0 32.0 41.0 30 37.019180291008745 39.0 35.0 41.0 31.0 41.0 31 36.91505143522987 39.0 35.0 41.0 31.0 41.0 32 36.7894565542806 39.0 35.0 41.0 31.0 41.0 33 36.67884068557118 39.0 35.0 41.0 31.0 41.0 34 36.56008685789814 39.0 35.0 41.0 30.0 41.0 35 36.4639121085525 39.0 35.0 41.0 30.0 41.0 36 36.375380903933326 39.0 35.0 41.0 30.0 41.0 37 36.27451791506262 39.0 35.0 41.0 30.0 41.0 38 36.13841238371017 38.0 35.0 40.0 30.0 41.0 39 36.07698327811546 38.0 35.0 40.0 29.0 41.0 40 35.958782250280436 38.0 35.0 40.0 29.0 41.0 41 35.82679352491264 38.0 35.0 40.0 29.0 41.0 42 35.75081025549291 38.0 35.0 40.0 28.0 41.0 43 35.65394109017097 38.0 34.0 40.0 28.0 41.0 44 35.53059219148489 38.0 34.0 40.0 28.0 41.0 45 35.42975404755072 38.0 34.0 40.0 28.0 41.0 46 35.291433590105754 37.0 34.0 40.0 27.0 41.0 47 35.12387436909389 37.0 34.0 40.0 27.0 41.0 48 35.04503144747842 37.0 34.0 40.0 27.0 41.0 49 34.932695066913624 37.0 34.0 40.0 27.0 41.0 50 34.802659153557855 36.0 34.0 40.0 26.0 41.0 51 33.29911440223704 35.0 31.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 6.0 11 5.0 12 6.0 13 9.0 14 18.0 15 43.0 16 94.0 17 168.0 18 304.0 19 642.0 20 1117.0 21 1772.0 22 2472.0 23 3529.0 24 4554.0 25 5781.0 26 7235.0 27 8727.0 28 10818.0 29 12939.0 30 16140.0 31 20152.0 32 25805.0 33 35172.0 34 59339.0 35 71552.0 36 68812.0 37 97992.0 38 151862.0 39 197865.0 40 61.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.397014632425375 19.74066855239735 24.548287997535382 13.314028817641892 2 30.448836201060132 26.200103603385372 24.797482711029787 18.553577484524713 3 31.783009293248515 26.135382543699137 24.837855732906995 17.243752430145356 4 28.47503021765407 26.25575626123457 25.69823588528099 19.570977635830374 5 25.933268984947695 30.01790077677694 23.46107357455282 20.58775666372254 6 24.685680496600593 36.12913404215937 24.053128412296754 15.132057048943281 7 82.03661398297874 5.911604200284971 7.756092289001271 4.295689527735023 8 83.51824177353096 5.707006147879547 6.490988120393594 4.28376395819591 9 77.86129817277914 6.72999640990667 8.396967427045949 7.011737990268238 10 42.55515265350133 24.77586761624014 15.952561078170865 16.716418652087658 11 33.146250961188485 25.543327705955203 21.72801502621762 19.582406306638692 12 28.773666354862716 22.156093282798732 28.192294839830907 20.87794552250765 13 25.46220898815269 24.985186206588132 29.36460317046235 20.188001634796823 14 21.49621176830109 28.619751972998525 27.923969525200842 21.960066733499545 15 20.461917060148348 25.416494304919425 32.04611717120521 22.075471463727013 16 23.527036881066046 23.661696437111875 29.735041174271082 23.076225507550998 17 22.954361093823174 24.031761766872506 26.759487349579437 26.25438978972488 18 24.79288639776992 24.52071011797618 27.354896253756245 23.331507230497657 19 25.400345096168536 26.325694757594164 25.039223943562245 23.234736202675055 20 26.30867597606439 25.6691673095294 25.6557510437979 22.366405670608316 21 25.810534998440982 27.524959844371317 25.59301757903485 21.071487578152855 22 24.210024186545724 23.954618238916364 25.82705688123996 26.008300693297954 23 22.978212232901406 26.95427165205163 26.147183888555553 23.92033222649141 24 23.483930916169456 26.244824489157047 27.268560099280364 23.002684495393126 25 23.679833240785943 27.292908137089388 25.263201046468726 23.764057575655936 26 22.409014736774107 26.282713017380278 25.811156121854477 25.49711612399114 27 23.524552387412065 25.732521897705947 26.45240393394725 24.29052178093474 28 22.08702435921803 26.51662809490269 26.81427043464974 24.582077111229538 29 23.66927414275652 26.23898592907019 25.865690757559385 24.226049170613905 30 24.920837820949995 25.51550137703061 26.33737187776788 23.226288924251513 31 27.23377718812462 25.781093748641293 23.46852705551477 23.51660200771932 32 26.35289996310527 27.09638468905941 23.374985869442344 23.175729478392977 33 24.79238949903912 26.506317446238665 22.727775272580008 25.973517782142203 34 24.32803763510987 26.7089279037209 26.106189743264846 22.85684471790438 35 23.64840439606307 26.36109879216341 24.590772839018477 25.399723972755044 36 25.84556635896213 27.83688802262877 23.07833732715688 23.239208291252222 37 23.15523240574763 28.32347610476116 25.16456664840564 23.356724841085573 38 23.525918858921756 29.767463816455546 23.327407815968588 23.37920950865411 39 23.89126365073982 27.214398137623558 24.6009592629998 24.29337894863682 40 24.367292634842787 25.099100240623212 27.834900427705584 22.69870669682842 41 21.685530184734525 25.801715045969342 26.304700786218017 26.208053983078113 42 23.721821183538243 25.771279998708064 25.445065981940218 25.06183283581348 43 23.256599746830098 25.341214147203768 25.56320365518706 25.838982450779074 44 23.935114963732605 25.01052804185875 26.49873974059402 24.555617253814628 45 24.08132741526945 25.061584386448082 25.124069401845727 25.733018796436742 46 24.964440684577383 25.751900948207002 25.083447930603125 24.200210436612494 47 22.644047836440816 25.74308099573537 27.89962148739182 23.713249680432003 48 22.568891903407856 26.456503348476325 26.23202934683904 24.74257540127678 49 23.290016186476155 25.010031143127954 27.6934085141113 24.00654415628459 50 22.73982506680182 24.923694988652077 27.71912302343002 24.617356921116084 51 22.163919437808776 25.063447756688568 25.671776027866084 27.10085677763658 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 857.0 1 1028.0 2 1199.0 3 1546.0 4 1893.0 5 1460.5 6 1028.0 7 1015.5 8 1003.0 9 1078.0 10 1153.0 11 1214.5 12 1276.0 13 1329.5 14 1383.0 15 1445.5 16 1508.0 17 1622.0 18 1736.0 19 1625.0 20 1514.0 21 1716.0 22 1918.0 23 2276.5 24 2635.0 25 3419.5 26 5245.0 27 6286.0 28 7342.0 29 8398.0 30 9998.5 31 11599.0 32 13002.5 33 14406.0 34 16525.0 35 18644.0 36 20334.0 37 22024.0 38 23351.0 39 24678.0 40 27209.0 41 29740.0 42 34306.5 43 38873.0 44 43338.0 45 47803.0 46 57652.5 47 67502.0 48 68314.5 49 69127.0 50 67990.0 51 66853.0 52 61261.0 53 55669.0 54 51895.0 55 48121.0 56 46055.0 57 43989.0 58 42199.5 59 40410.0 60 38497.0 61 36584.0 62 34868.5 63 33153.0 64 30059.5 65 26966.0 66 23762.5 67 20559.0 68 17618.5 69 14678.0 70 13169.0 71 11660.0 72 10221.0 73 8782.0 74 7755.5 75 5033.5 76 3338.0 77 2785.0 78 2232.0 79 1932.0 80 1632.0 81 1130.5 82 629.0 83 434.0 84 239.0 85 222.5 86 206.0 87 164.0 88 122.0 89 79.0 90 36.0 91 22.5 92 9.0 93 9.0 94 9.0 95 4.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 804993.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.74150772481218 #Duplication Level Percentage of deduplicated Percentage of total 1 73.95074311120624 19.036036250527165 2 9.482906023781066 4.882085973296565 3 3.3919079795092926 2.6193847636917154 4 1.769810308096353 1.8223034286925799 5 1.1205776766614761 1.4422679460016736 6 0.8323826855406651 1.2856071197906964 7 0.6246190453124028 1.1255045185981816 8 0.5235691132531793 1.0781966698623824 9 0.4346632916836901 1.00699996325112 >10 6.6875141811648735 42.687029431994524 >50 1.105780425155578 17.784925702695183 >100 0.06777988595464962 3.071394493190152 >500 0.004841420425332116 0.8336197104868706 >1k 0.0029048522551992696 1.3246440279212062 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCG 2619 0.32534444398895396 No Hit GAATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTC 2308 0.2867105676695325 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC 2200 0.2732943019380293 No Hit GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC 1351 0.1678275463264898 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 1093 0.1357775781901209 No Hit CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC 1058 0.13142971429565226 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 914 0.11354135998698126 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 875 0.10869659736171618 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.050062547127739 0.0 2 0.0 0.0 0.0 0.47602898410296735 0.0 3 0.0 0.0 0.0 0.699633412961355 0.0 4 0.0 0.0 0.0 1.0493258947593334 0.0 5 0.0 0.0 0.0 2.206603038784188 0.0 6 1.242246826991042E-4 0.0 0.0 2.943006957824478 0.0 7 1.242246826991042E-4 0.0 0.0 3.586863488253935 0.0 8 1.242246826991042E-4 0.0 0.0 4.523144921757083 0.0 9 1.242246826991042E-4 0.0 0.0 4.897433890729484 0.0 10 1.242246826991042E-4 0.0 0.0 5.927877633718554 0.0 11 1.242246826991042E-4 0.0 0.0 6.885028813915152 0.0 12 1.242246826991042E-4 0.0 0.0 7.916963253096611 0.0 13 1.242246826991042E-4 0.0 0.0 8.24168657367207 0.0 14 2.484493653982084E-4 0.0 0.0 8.377961050592987 0.0 15 2.484493653982084E-4 0.0 0.0 8.634236571001239 0.0 16 2.484493653982084E-4 0.0 0.0 9.105048118430844 0.0 17 2.484493653982084E-4 0.0 0.0 9.662320045019024 0.0 18 2.484493653982084E-4 0.0 0.0 10.336114723978966 0.0 19 2.484493653982084E-4 0.0 0.0 10.744317031328222 0.0 20 2.484493653982084E-4 0.0 0.0 11.089661649231733 0.0 21 2.484493653982084E-4 0.0 0.0 11.472522121310371 0.0 22 2.484493653982084E-4 0.0 0.0 11.903209096228165 0.0 23 3.726740480973126E-4 0.0 0.0 12.30756043841375 0.0 24 3.726740480973126E-4 0.0 0.0 12.639861464633855 0.0 25 4.968987307964168E-4 0.0 0.0 12.94011252271759 0.0 26 4.968987307964168E-4 0.0 0.0 13.21713356513659 0.0 27 6.21123413495521E-4 0.0 0.0 13.531918911096122 0.0 28 6.21123413495521E-4 0.0 0.0 13.810306425024814 0.0 29 6.21123413495521E-4 0.0 0.0 14.13391172345598 0.0 30 6.21123413495521E-4 0.0 0.0 14.493293730504488 0.0 31 6.21123413495521E-4 0.0 0.0 14.806215706223533 0.0 32 6.21123413495521E-4 0.0 0.0 15.106218314941868 0.0 33 6.21123413495521E-4 0.0 0.0 15.411686809698967 0.0 34 6.21123413495521E-4 0.0 0.0 15.727590177802789 0.0 35 6.21123413495521E-4 0.0 0.0 16.077034210235368 0.0 36 6.21123413495521E-4 0.0 0.0 16.37082558481875 0.0 37 7.453480961946252E-4 0.0 0.0 16.692443288326732 0.0 38 7.453480961946252E-4 0.0 0.0 17.01977532723887 0.0 39 7.453480961946252E-4 0.0 0.0 17.420399928943482 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATACG 20 7.0320244E-4 45.000004 1 CAATCGA 20 7.0320244E-4 45.000004 28 CGTCACA 20 7.0320244E-4 45.000004 23 GCGAATG 35 1.2113196E-7 45.0 1 ACCGAAC 25 3.889761E-5 45.0 10 TAGTTCG 25 3.889761E-5 45.0 40 TCGACAC 25 3.889761E-5 45.0 34 AGATCGG 50 1.0804797E-9 40.5 2 GCGTACG 50 1.0804797E-9 40.5 1 TTTAACG 40 3.4564982E-7 39.375004 39 TTACGGG 160 0.0 39.375004 3 AATAGCG 35 6.2459585E-6 38.571426 1 AAGGGAT 555 0.0 38.51351 5 GCTACGA 135 0.0 38.333336 10 TTGAGCG 65 9.094947E-12 38.076927 1 TATGCGG 90 0.0 37.5 2 GCATCCG 30 1.139618E-4 37.499996 28 ACGGGCT 250 0.0 36.9 5 GCGATAT 55 2.746674E-9 36.81818 9 GTACGAG 55 2.746674E-9 36.81818 1 >>END_MODULE