SRR3554047_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554047_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	762980
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	1912	0.25059634590683894	No Hit
CTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGCT	1001	0.13119609950457417	No Hit
CCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	917	0.12018663660908542	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	903	0.11835172612650398	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	799	0.10472096254161316	No Hit
TCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	774	0.10144433667986054	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	764	0.10013368633515951	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAA	30	2.1645374E-6	45.000004	27
TGCGTAG	60	0.0	45.000004	1
TCGTTGC	40	6.8102963E-9	45.0	16
GAATGCG	35	1.2112105E-7	45.0	1
TAGCGTG	20	7.031794E-4	45.0	2
CACGCGT	20	7.031794E-4	45.0	39
TTATCGG	20	7.031794E-4	45.0	2
TACGACA	20	7.031794E-4	45.0	1
CGAATAT	75	0.0	45.0	14
ACGTAAG	20	7.031794E-4	45.0	1
TGTACGC	20	7.031794E-4	45.0	36
ATACCGT	20	7.031794E-4	45.0	41
GACTATC	20	7.031794E-4	45.0	39
CGTCAGG	100	0.0	42.75	2
CTACGAA	85	0.0	42.35294	11
TTGAGCG	75	0.0	42.0	1
TTAGTCA	120	0.0	41.250004	32
GTTAGCG	55	6.002665E-11	40.90909	1
GACACGA	380	0.0	40.855267	25
ATTGGGC	105	0.0	40.714287	4