SRR3554043_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554043_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	948948
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC	2129	0.2243537053663636	No Hit
CCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC	1583	0.16681630605681239	No Hit
CTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGCT	1505	0.15859667758401935	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1232	0.12982797792924375	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1074	0.1131779612792271	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1045	0.11012194556498354	No Hit
TCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC	974	0.10263997605769759	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATCG	30	2.1650994E-6	45.000004	2
TGTAACG	30	2.1650994E-6	45.000004	1
TGTATAC	25	3.89029E-5	45.0	44
CGCCTAT	25	3.89029E-5	45.0	27
CTAACGG	20	7.0326636E-4	45.0	2
TACGAAC	20	7.0326636E-4	45.0	39
GTATACG	20	7.0326636E-4	45.0	1
TATAGCG	40	6.8121153E-9	45.0	1
TGTCGAT	20	7.0326636E-4	45.0	36
TACGAAT	175	0.0	43.714287	12
GCTACGA	175	0.0	43.714287	10
CGTATGG	60	3.6379788E-12	41.250004	2
ACCGCGT	50	1.0804797E-9	40.5	25
ACCACGC	50	1.0804797E-9	40.5	17
CGTAAGG	170	0.0	39.705883	2
CGTTTGG	120	0.0	39.375004	2
TCGTTTA	40	3.4573713E-7	39.375	38
CGAATAT	195	0.0	39.23077	14
ACGCATT	115	0.0	39.130432	17
AATCTCG	35	6.247137E-6	38.571426	18