SRR3554042_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554042_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	589395
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC	919	0.15592259859686627	No Hit
GGGTCAGGGAGGGTCATTTCCACATTTCATTTACACACAGAACTAAACAGA	904	0.15337761602999686	No Hit
CTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGCT	614	0.10417461973718813	Illumina Single End Adapter 1 (95% over 21bp)
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	590	0.10010264763019706	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAAAT	20	7.0304866E-4	45.0	33
AAACGCG	20	7.0304866E-4	45.0	1
CCCCGTG	20	7.0304866E-4	45.0	12
CTAAACG	20	7.0304866E-4	45.0	19
CTACGAC	20	7.0304866E-4	45.0	34
AACGCTA	20	7.0304866E-4	45.0	36
CCATAGT	20	7.0304866E-4	45.0	37
GATATCG	20	7.0304866E-4	45.0	2
TATTAGT	55	1.8189894E-12	45.0	30
ACGCTAC	20	7.0304866E-4	45.0	37
CATGTCG	20	7.0304866E-4	45.0	31
CATCGTT	40	6.8048394E-9	45.0	36
CTAGGCG	20	7.0304866E-4	45.0	1
ATCGACT	20	7.0304866E-4	45.0	28
TACGTCG	20	7.0304866E-4	45.0	10
ATCGACG	35	1.2105738E-7	45.0	1
TAATCGA	20	7.0304866E-4	45.0	33
ACATCGG	30	2.1636952E-6	44.999996	2
ATACGAG	30	2.1636952E-6	44.999996	1
TAATGCG	25	3.8884857E-5	44.999996	1