SRR3554040_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554040_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	599095
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC	1556	0.25972508533705	Illumina PCR Primer Index 7 (96% over 27bp)
CCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC	1422	0.23735801500596732	Illumina PCR Primer Index 7 (96% over 27bp)
CTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGCT	1326	0.22133384521653496	Illumina PCR Primer Index 7 (96% over 28bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1082	0.1806057470017276	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	690	0.11517372036154534	No Hit
TCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC	644	0.1074954723374423	Illumina PCR Primer Index 7 (96% over 27bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCC	636	0.1061601248549896	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	625	0.10432402206661714	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	90	0.0	45.000004	21
CAATAAG	45	3.8380676E-10	45.000004	15
TCGAAGT	35	1.2106284E-7	45.000004	41
AACACGA	45	3.8380676E-10	45.000004	45
AAGTACG	25	3.8885613E-5	45.0	1
TACCCGT	25	3.8885613E-5	45.0	35
CCCTCGA	20	7.030579E-4	45.0	14
GGCGTAT	25	3.8885613E-5	45.0	8
ATTACCG	20	7.030579E-4	45.0	1
TTCGTCA	20	7.030579E-4	45.0	24
CGCGATG	25	3.8885613E-5	45.0	45
TCTACGG	20	7.030579E-4	45.0	2
CGCTATA	25	3.8885613E-5	45.0	20
GTATCGA	20	7.030579E-4	45.0	37
AGCTCGA	20	7.030579E-4	45.0	10
CGCCGTT	20	7.030579E-4	45.0	26
CGACTCA	20	7.030579E-4	45.0	10
TTCGCAT	25	3.8885613E-5	45.0	35
CAATCCA	20	7.030579E-4	45.0	36
TCGACAC	20	7.030579E-4	45.0	34