SRR3554033_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554033_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1576702
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTC	4271	0.2708818787570511	No Hit
GCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	3925	0.24893733882496502	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCG	3640	0.23086163396761086	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGC	2820	0.17885434279908313	No Hit
CCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	2164	0.13724850986426096	No Hit
CTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGCT	1895	0.12018758141995127	TruSeq Adapter, Index 13 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCGC	20	7.0340856E-4	45.0	39
GAACGTA	20	7.0340856E-4	45.0	9
CTCGAAG	20	7.0340856E-4	45.0	1
TACTACG	20	7.0340856E-4	45.0	1
CGCATCG	50	1.0822987E-9	40.5	21
TATAGCG	45	1.9290383E-8	40.0	1
TAATGCG	115	0.0	39.130436	1
TCGCGAG	35	6.2497693E-6	38.571426	1
CAATTCG	65	9.094947E-12	38.076927	4
GCGCGAC	160	0.0	37.96875	9
AAGGGCG	540	0.0	37.916664	5
CTATGCG	60	1.5643309E-10	37.499996	1
GTCGAAC	30	1.1401145E-4	37.499996	9
GTACGAC	30	1.1401145E-4	37.499996	13
CATCGCC	55	2.750312E-9	36.81818	23
CGCCAGT	55	2.750312E-9	36.81818	26
CGTTTTT	1570	0.0	36.687897	1
GCGAGAC	345	0.0	36.521736	21
CGTAAGG	265	0.0	36.50943	2
CGCATGG	155	0.0	36.290325	2