SRR3554030_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554030_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	478273
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TATATATATATATATATATATATATATATATATATATATATATATATATAT	1456	0.3044286422189837	No Hit
CCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC	1184	0.2475573574088439	TruSeq Adapter, Index 16 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC	1158	0.24212113165493349	TruSeq Adapter, Index 16 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGCT	796	0.1664321423120268	TruSeq Adapter, Index 13 (95% over 23bp)
CTATATATATATATATATATATATATATATATATATATATATATATATATA	615	0.12858764764057348	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTC	581	0.121478737039306	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCG	565	0.1181333673445919	No Hit
TCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC	565	0.1181333673445919	TruSeq Adapter, Index 16 (95% over 21bp)
ATATATATATATATATATATATATATATATATATATATATATATATATATA	556	0.11625159689131523	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCTAGG	30	2.162833E-6	45.000004	2
ACTATGC	25	3.887378E-5	45.0	8
TGATACA	20	7.029151E-4	45.0	37
ATTAGCG	35	1.2099372E-7	45.0	1
ACGCATT	25	3.887378E-5	45.0	17
ACGTTAC	20	7.029151E-4	45.0	42
TACGCAT	25	3.887378E-5	45.0	16
TGCGCGA	20	7.029151E-4	45.0	1
GTTAACG	25	3.887378E-5	45.0	2
AATTGCG	25	3.887378E-5	45.0	1
CACTAAG	20	7.029151E-4	45.0	19
CGCTAAG	20	7.029151E-4	45.0	26
TGTTATA	20	7.029151E-4	45.0	36
TCGTAAG	25	3.887378E-5	45.0	1
TCATCGG	20	7.029151E-4	45.0	2
CGTCGTA	20	7.029151E-4	45.0	30
CGTAAGG	105	0.0	45.0	2
CATCGGC	20	7.029151E-4	45.0	19
CGGTCTA	25	3.887378E-5	45.0	31
TGAATCG	20	7.029151E-4	45.0	34