SRR3554028_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554028_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1347509
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	1955	0.14508251892937266	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	1868	0.13862616130949776	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	1760	0.13061137253999788	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1463	0.10857070342387323	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCAA	20	7.033719E-4	45.000004	32
CGGTTTA	20	7.033719E-4	45.000004	21
GTTACGT	20	7.033719E-4	45.000004	12
AATGCGC	20	7.033719E-4	45.000004	33
CCCGTAG	20	7.033719E-4	45.000004	13
CGATACC	20	7.033719E-4	45.000004	10
GTATACG	45	3.8562575E-10	45.0	1
ATACGGT	25	3.8911654E-5	45.0	28
CAATACG	35	1.2121382E-7	45.0	1
TTACGAG	80	0.0	42.187504	1
CATCGCG	45	1.9286745E-8	40.0	1
TTCGCAT	45	1.9286745E-8	40.0	25
ATGTACG	40	3.4588084E-7	39.375004	1
ATTAACG	35	6.249091E-6	38.571426	1
TTACGCG	35	6.249091E-6	38.571426	1
ATAACGG	65	9.094947E-12	38.076927	2
ACGATAG	60	1.5643309E-10	37.500004	1
CACGACC	350	0.0	37.285713	27
GATCGAC	85	0.0	37.058823	23
AGGGATC	645	0.0	36.627907	6