##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3554026_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1119323 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.833573508272412 31.0 31.0 34.0 30.0 34.0 2 31.933320408854282 33.0 31.0 34.0 30.0 34.0 3 31.981738068457453 33.0 31.0 34.0 30.0 34.0 4 35.60116338179417 37.0 35.0 37.0 33.0 37.0 5 35.452899654523314 37.0 35.0 37.0 33.0 37.0 6 35.41425307976339 37.0 35.0 37.0 33.0 37.0 7 35.66134976231168 37.0 35.0 37.0 35.0 37.0 8 35.343130624493554 37.0 35.0 37.0 33.0 37.0 9 37.10590062028565 39.0 37.0 39.0 34.0 39.0 10 36.68515254309971 39.0 35.0 39.0 32.0 39.0 11 36.69766099687043 39.0 35.0 39.0 32.0 39.0 12 36.62147119285497 39.0 35.0 39.0 32.0 39.0 13 36.537304245512686 39.0 35.0 39.0 32.0 39.0 14 37.5494669545788 39.0 36.0 41.0 32.0 41.0 15 37.64152438572244 39.0 36.0 41.0 32.0 41.0 16 37.791473060055054 40.0 36.0 41.0 33.0 41.0 17 37.67346958831365 39.0 36.0 41.0 33.0 41.0 18 37.67419055982947 39.0 36.0 41.0 33.0 41.0 19 37.6610853167495 39.0 36.0 41.0 33.0 41.0 20 37.48013308044237 39.0 36.0 41.0 32.0 41.0 21 37.46816513195923 39.0 36.0 41.0 32.0 41.0 22 37.49419961887677 39.0 36.0 41.0 32.0 41.0 23 37.35068429756201 39.0 35.0 41.0 32.0 41.0 24 37.335123999060144 39.0 35.0 41.0 32.0 41.0 25 37.29738779601598 39.0 35.0 41.0 32.0 41.0 26 37.22147226493157 39.0 35.0 41.0 32.0 41.0 27 37.140247274468585 39.0 35.0 41.0 31.0 41.0 28 37.025867421646836 39.0 35.0 41.0 31.0 41.0 29 37.0191374607687 39.0 35.0 41.0 31.0 41.0 30 36.905448203959 39.0 35.0 41.0 31.0 41.0 31 36.86316103573321 39.0 35.0 41.0 31.0 41.0 32 36.72394474159827 39.0 35.0 41.0 30.0 41.0 33 36.647043793435856 39.0 35.0 41.0 30.0 41.0 34 36.497459625148416 39.0 35.0 41.0 30.0 41.0 35 36.41324890134483 39.0 35.0 40.0 30.0 41.0 36 36.33367044186531 39.0 35.0 40.0 30.0 41.0 37 36.27227082799156 39.0 35.0 40.0 30.0 41.0 38 36.25549997632498 39.0 35.0 40.0 30.0 41.0 39 36.06150235454824 38.0 35.0 40.0 29.0 41.0 40 35.99683916081417 38.0 35.0 40.0 29.0 41.0 41 35.84875857996307 38.0 35.0 40.0 28.0 41.0 42 35.82804159299862 38.0 35.0 40.0 29.0 41.0 43 35.81500424810354 38.0 35.0 40.0 29.0 41.0 44 35.77068460131704 38.0 35.0 40.0 28.0 41.0 45 35.708388016685085 38.0 34.0 40.0 28.0 41.0 46 35.5730445992801 38.0 34.0 40.0 28.0 41.0 47 35.3793480523495 38.0 34.0 40.0 27.0 41.0 48 35.36274962633664 38.0 34.0 40.0 27.0 41.0 49 35.32554410121118 38.0 34.0 40.0 27.0 41.0 50 35.18683257647703 38.0 34.0 40.0 27.0 41.0 51 33.70884722283023 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 1.0 11 6.0 12 12.0 13 14.0 14 21.0 15 47.0 16 72.0 17 193.0 18 346.0 19 759.0 20 1542.0 21 2651.0 22 4309.0 23 6062.0 24 7267.0 25 8466.0 26 9974.0 27 11966.0 28 14386.0 29 18368.0 30 23064.0 31 29762.0 32 37810.0 33 50767.0 34 78313.0 35 93503.0 36 97901.0 37 136849.0 38 217392.0 39 267425.0 40 72.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.36899000556586 16.648188235210032 20.784349111025147 15.198472648198955 2 26.397116828654465 30.249356083990055 25.65398906303185 17.69953802432363 3 29.951318788231816 30.42383655120104 24.342750037299332 15.282094623267813 4 26.736250394211503 24.743706686988475 30.61636364123671 17.903679277563313 5 27.96681565553464 28.89755682676046 23.67145140410766 19.464176113597237 6 22.87463046859575 38.94353997907663 24.17907967583977 14.00274987648784 7 76.89121013326805 5.926260784420583 12.507649713264179 4.674879369047183 8 77.27769374881066 9.136683513159294 8.056119636601768 5.529503101428275 9 71.74702923106199 6.934548829962398 9.584454174532283 11.733967764443328 10 39.912607888875684 24.26984882826494 18.632870047341115 17.184673235518254 11 31.596330996504136 24.468540358770436 24.07875117370053 19.856377471024896 12 25.883413456169492 20.916214533249118 29.930681313615466 23.269690696965935 13 24.8756614489294 23.819576654817244 32.985384915703506 18.31937698054985 14 21.49334910477137 28.750950351239098 28.223399322626264 21.53230122136327 15 19.449792419167657 24.936233777024146 35.35217269724646 20.261801106561734 16 22.37959909695414 24.497039728478732 28.653391380325427 24.4699697942417 17 22.340378961211375 25.99151451368372 28.090729842949713 23.577376682155197 18 23.21537214905796 24.12601188396915 29.1818358061078 23.476780160865093 19 22.598124044623404 27.244861402830107 25.66676464255626 24.490249909990236 20 24.14298643019039 26.39023767044901 28.417534527567113 21.049241371793485 21 22.9158160781115 30.47842311825988 27.277827758386096 19.327933045242528 22 21.254276022202706 23.91651024771223 28.747287422843986 26.081926307241073 23 21.631110948314294 28.413871599171998 27.681285920149946 22.273731532363758 24 22.130341286652737 25.91477169682031 27.76106628738979 24.193820729137165 25 20.884230914579614 30.369964701877834 25.493534931382634 23.252269452159922 26 21.22756344683349 25.506042491756176 28.38153062163468 24.88486343977565 27 23.742565818802973 26.178681220702156 25.19129866892756 24.887454291567312 28 19.860129739136962 26.43035120336132 29.07668295925305 24.632836098248674 29 24.432804471988874 23.587472070170985 27.373421255526782 24.606302202313362 30 23.276212496303568 25.92870869266512 26.612157527362523 24.18292128366879 31 23.931429980443536 24.066243613326986 24.49444887668707 27.507877529542412 32 25.53874082816131 25.457084326865438 26.54220452898761 22.461970315985642 33 24.684742473798895 23.0472348017507 25.434481378476097 26.83354134597431 34 24.142093033020853 22.83237278247655 28.827067790083827 24.19846639441877 35 22.46482918692817 22.973082836678955 29.162985125830527 25.39910285056235 36 24.62702901664667 23.91847572148522 28.316223288541376 23.138271973326734 37 20.60888590692767 24.06686899134566 31.91804331725516 23.406201784471506 38 22.651281176210976 24.812944967627754 27.8825683024471 24.653205553714162 39 23.587650749604894 22.908043522736513 31.219228051241686 22.285077676416908 40 24.673485669462703 22.087815581382674 30.950315503210422 22.2883832459442 41 20.158524393763017 23.835925823019807 30.67845474451968 25.3270950386975 42 20.862074664775047 23.17132766859968 32.18400765462695 23.782590011998327 43 22.72900672996088 21.902882367288086 29.83142488807967 25.536686014671368 44 23.125853752670142 22.30902072056055 29.32924633908175 25.23587918768756 45 22.1581259386254 21.683464022449282 28.3155979105227 27.842812128402617 46 25.724746118859347 24.08080598719047 27.11996447852854 23.074483415421643 47 20.703139308314043 22.893213129722163 33.13074063518752 23.272906926776272 48 22.053687809506282 23.78687831841211 28.575576486858573 25.58385738522303 49 22.07307452808528 21.699098472916216 32.28263870214406 23.94518829685444 50 21.878760643710528 21.43715442280736 31.054396273461727 25.62968866002039 51 21.845615608720628 21.63352312067205 27.933134582243017 28.587726688364306 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1696.0 1 1682.5 2 1669.0 3 1849.5 4 2030.0 5 1586.0 6 1142.0 7 1260.0 8 1378.0 9 1512.0 10 1646.0 11 1701.5 12 1757.0 13 1746.0 14 1735.0 15 1731.0 16 1727.0 17 1648.5 18 1570.0 19 1624.0 20 1678.0 21 2042.0 22 2406.0 23 2717.5 24 3029.0 25 4203.5 26 6240.5 27 7103.0 28 8856.0 29 10609.0 30 12439.0 31 14269.0 32 15964.5 33 17660.0 34 20855.5 35 24051.0 36 26816.5 37 29582.0 38 32379.0 39 35176.0 40 38798.5 41 42421.0 42 49446.0 43 56471.0 44 64424.5 45 72378.0 46 108083.5 47 143789.0 48 130764.5 49 117740.0 50 115352.5 51 112965.0 52 99906.0 53 86847.0 54 78430.5 55 70014.0 56 63629.0 57 57244.0 58 52336.0 59 47428.0 60 43788.5 61 40149.0 62 35844.5 63 31540.0 64 27466.5 65 23393.0 66 19838.0 67 16283.0 68 13902.0 69 11521.0 70 9773.5 71 8026.0 72 6648.0 73 5270.0 74 4508.0 75 3004.0 76 2262.0 77 1770.0 78 1278.0 79 1016.0 80 754.0 81 515.0 82 276.0 83 208.0 84 140.0 85 93.0 86 46.0 87 32.0 88 18.0 89 15.5 90 13.0 91 10.0 92 7.0 93 6.0 94 5.0 95 5.0 96 5.0 97 3.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1119323.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.265517489283262 #Duplication Level Percentage of deduplicated Percentage of total 1 73.35084635988757 21.466504769990188 2 10.294119115914866 6.025254460471433 3 3.9187404376692796 3.440519004437155 4 2.023762695012378 2.3690585018017507 5 1.225619135640778 1.7934189124647708 6 0.8686170547182113 1.5252316563807315 7 0.7017264708216782 1.4375471813167389 8 0.5534608554005613 1.295785467468704 9 0.4690168260976543 1.235341811423612 >10 6.0193902131741535 40.71677940382463 >50 0.510572655563117 9.20478742248654 >100 0.05615051176211903 2.940202924007942 >500 0.003988834168826374 0.7622814837265419 >1k 0.0030683339760202875 2.1693907839968816 >5k 0.0 0.0 >10k+ 9.205001928060861E-4 3.6178962162024235 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCG 14616 1.3057893029983303 No Hit GAATCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTC 13999 1.2506666976377685 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGC 11675 1.0430411954368846 No Hit GCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGC 4979 0.4448224507135117 TruSeq Adapter, Index 20 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCT 3162 0.28249218500825946 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCCTGTTTT 2848 0.2544395138847321 No Hit CCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGC 2473 0.22093712002701632 TruSeq Adapter, Index 20 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTC 2339 0.20896559795519254 No Hit GAACTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCT 2246 0.20065700427847905 No Hit CTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGCT 1777 0.15875667702709584 TruSeq Adapter, Index 22 (95% over 23bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTA 1752 0.15652318410324814 No Hit GAATGCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTT 1493 0.13338419741218574 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.933971695390875E-5 0.0 0.0 0.16492111749691554 0.0 2 8.933971695390875E-5 0.0 0.0 1.019187491010191 0.0 3 8.933971695390875E-5 0.0 0.0 1.3143659158259056 0.0 4 8.933971695390875E-5 0.0 0.0 1.890607090178617 0.0 5 8.933971695390875E-5 0.0 0.0 4.277317628602289 0.0 6 8.933971695390875E-5 0.0 0.0 5.403266081372401 0.0 7 8.933971695390875E-5 0.0 0.0 6.545117003760309 0.0 8 8.933971695390875E-5 0.0 0.0 8.095071753193672 0.0 9 8.933971695390875E-5 0.0 0.0 8.619317212279208 0.0 10 8.933971695390875E-5 0.0 0.0 11.101621247843562 0.0 11 8.933971695390875E-5 0.0 0.0 12.31753479558626 0.0 12 1.786794339078175E-4 0.0 0.0 14.565143394712697 0.0 13 1.786794339078175E-4 0.0 0.0 15.070002135219235 0.0 14 1.786794339078175E-4 0.0 0.0 15.298622470904288 0.0 15 1.786794339078175E-4 0.0 0.0 15.77524986085339 0.0 16 1.786794339078175E-4 0.0 0.0 16.457805298381253 0.0 17 2.6801915086172625E-4 0.0 0.0 17.273566253887395 0.0 18 2.6801915086172625E-4 0.0 0.0 18.187332878891972 0.0 19 2.6801915086172625E-4 0.0 0.0 18.976023900161078 0.0 20 2.6801915086172625E-4 0.0 0.0 19.50723785716902 0.0 21 3.57358867815635E-4 0.0 0.0 20.0953612138766 0.0 22 3.57358867815635E-4 0.0 0.0 20.775593818763664 0.0 23 3.57358867815635E-4 0.0 0.0 21.40749363677866 0.0 24 3.57358867815635E-4 0.0 0.0 21.88885603172632 0.0 25 3.57358867815635E-4 0.0 0.0 22.33984292290965 0.0 26 3.57358867815635E-4 0.0 0.0 22.787524244565688 0.0 27 5.360383017234525E-4 0.0 0.0 23.262632859326576 0.0 28 6.253780186773612E-4 0.0 0.0 23.692267558157923 0.0 29 6.253780186773612E-4 0.0 0.0 24.145845301132915 0.0 30 6.253780186773612E-4 0.0 0.0 24.667946607011558 0.0 31 6.253780186773612E-4 0.0 0.0 25.120630952817017 0.0 32 7.1471773563127E-4 0.0 0.0 25.559556982211568 0.0 33 7.1471773563127E-4 0.0 0.0 26.0002698059452 0.0 34 7.1471773563127E-4 0.0 0.0 26.43749838071763 0.0 35 7.1471773563127E-4 0.0 0.0 26.915287186987133 0.0 36 7.1471773563127E-4 0.0 0.0 27.332414325444933 0.0 37 7.1471773563127E-4 0.0 0.0 27.76660534984093 0.0 38 8.040574525851787E-4 0.0 0.0 28.216341484986906 0.0 39 8.040574525851787E-4 0.0 0.0 28.746126006523586 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTACGT 20 7.033207E-4 45.0 44 TCAATCG 20 7.033207E-4 45.0 19 CCCGTAA 20 7.033207E-4 45.0 41 ACCCGAA 20 7.033207E-4 45.0 16 CCAACGT 25 3.8907398E-5 45.0 32 ATACGGT 35 1.2118835E-7 45.0 28 TCGACGT 20 7.033207E-4 45.0 26 TATAACG 25 3.8907398E-5 45.0 1 CGTATGG 60 3.6379788E-12 41.250004 2 CCGATGA 1215 0.0 40.185184 18 CGATGAA 1250 0.0 40.14 19 TAGGACG 75 0.0 39.0 1 TACGGCT 1470 0.0 38.877552 7 CATACGA 140 0.0 38.571426 18 GCGATGT 275 0.0 38.454544 9 TGATCCG 295 0.0 38.135593 4 GATGAAT 1360 0.0 38.05147 20 CGCATCG 30 1.13990274E-4 37.500004 21 ATAGCGC 30 1.13990274E-4 37.500004 12 TCGATTG 30 1.13990274E-4 37.500004 1 >>END_MODULE