SRR3554024_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554024_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	679762
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	1624	0.23890714691318432	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	1383	0.20345356168776718	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1029	0.15137651119068143	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1019	0.14990540806929487	No Hit
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT	962	0.14152012027739122	Illumina Single End Adapter 1 (95% over 21bp)
TATATATATATATATATATATATATATATATATATATATATATATATATAT	799	0.11754113939878959	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCC	709	0.10430121130631015	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATAG	30	2.1641881E-6	45.000004	1
TAGCCCG	30	2.1641881E-6	45.000004	1
TCGTTTA	20	7.03125E-4	45.0	38
TCGTTGA	20	7.03125E-4	45.0	24
CTCCGAC	20	7.03125E-4	45.0	30
GTCTACG	25	3.889118E-5	45.0	1
ACGATTG	20	7.03125E-4	45.0	1
TCTACGG	35	1.2109558E-7	45.0	2
GCTTAAC	20	7.03125E-4	45.0	15
GATATGC	20	7.03125E-4	45.0	11
TATTACG	25	3.889118E-5	45.0	1
TCGTAAG	25	3.889118E-5	45.0	1
TTACGAA	20	7.03125E-4	45.0	45
CGCACGG	40	6.8084773E-9	45.0	2
CACGTTA	20	7.03125E-4	45.0	44
ATCGGTA	25	3.889118E-5	45.0	41
ATACGAG	20	7.03125E-4	45.0	1
ATGCCTA	20	7.03125E-4	45.0	38
TACGTGA	20	7.03125E-4	45.0	42
TAGTACG	20	7.03125E-4	45.0	1