SRR3554023_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554023_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	666340
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	1500	0.22511030404898402	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	1414	0.21220397995017562	No Hit
CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCT	982	0.1473722123840682	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	720	0.10805294594351232	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	698	0.10475132815079388	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATGC	45	3.8380676E-10	45.000004	42
TCGCGCA	45	3.8380676E-10	45.000004	34
TCGTTTA	20	7.031151E-4	45.0	38
TTTACGT	20	7.031151E-4	45.0	31
ACGCATA	25	3.8890343E-5	45.0	15
CTATACG	20	7.031151E-4	45.0	1
CGTAGAA	20	7.031151E-4	45.0	36
CTTGACG	35	1.2109012E-7	45.0	1
TGTTACG	20	7.031151E-4	45.0	1
CGGTCTA	20	7.031151E-4	45.0	31
TTACCGG	35	1.2109012E-7	45.0	2
TAATGCG	35	1.2109012E-7	45.0	1
TACCGGC	20	7.031151E-4	45.0	11
CCCGATT	20	7.031151E-4	45.0	24
CGCTACA	70	0.0	41.785713	28
AATACGG	55	6.002665E-11	40.909092	2
GTCGATG	50	1.0804797E-9	40.5	1
CGTGTAC	45	1.9261279E-8	40.000004	18
AACACGT	220	0.0	39.886364	41
AATAGCG	40	3.4552977E-7	39.375	1