SRR3554017_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554017_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	360086
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1201	0.3335314341573957	No Hit
GCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC	709	0.1968974078414601	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	629	0.17468049299334049	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	534	0.14829790661119843	No Hit
CCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC	511	0.14191054359236405	No Hit
CTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGCT	509	0.14135512072116105	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	483	0.13413462339552218	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	464	0.12885810611909376	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	410	0.11386168859661304	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCC	362	0.10053153968774126	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGTG	30	2.1613341E-6	45.000004	1
TAGGTCG	30	2.1613341E-6	45.000004	1
TCGGGTA	30	2.1613341E-6	45.000004	27
ACCTAAT	30	2.1613341E-6	45.000004	22
TCGTTTA	20	7.0268277E-4	45.0	38
ACTATAT	20	7.0268277E-4	45.0	37
TCGTTGC	20	7.0268277E-4	45.0	16
TCGTTGA	20	7.0268277E-4	45.0	24
GGTAAGT	20	7.0268277E-4	45.0	8
GTCGAAT	20	7.0268277E-4	45.0	28
ACGCATT	40	6.7921064E-9	45.0	17
CGCATCG	20	7.0268277E-4	45.0	21
GAGTACG	25	3.8854523E-5	45.0	1
TAAACGG	25	3.8854523E-5	45.0	2
GCACGAG	25	3.8854523E-5	45.0	1
CGATTAG	20	7.0268277E-4	45.0	10
AATATCA	20	7.0268277E-4	45.0	26
CTAACGG	20	7.0268277E-4	45.0	1
CGCTCGT	20	7.0268277E-4	45.0	13
CGCTCGA	20	7.0268277E-4	45.0	20