SRR3554015_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554015_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1022063
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	2133	0.20869555007861548	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1875	0.18345248776249604	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	1529	0.14959938868739012	No Hit
CTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCT	1527	0.14940370603377678	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1377	0.1347275070127771	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAAG	20	7.03292E-4	45.0	1
GCCGCAT	35	1.2117562E-7	45.0	19
CGTACGT	20	7.03292E-4	45.0	13
CGTACAT	20	7.03292E-4	45.0	31
ACCCGGT	20	7.03292E-4	45.0	20
ATACGCG	25	3.890501E-5	45.0	1
TCGAACG	35	1.2117562E-7	45.0	1
GATCGCC	30	2.165265E-6	44.999996	9
CGTTAGG	205	0.0	43.90244	2
TACGCGG	60	3.6379788E-12	41.249996	2
TACGTAG	120	0.0	41.249996	1
AAGGGCG	385	0.0	40.909092	5
CGCGAGG	95	0.0	40.263157	2
CTAACGC	95	0.0	40.263157	25
CGACGGT	40	3.457717E-7	39.375	28
TTCACGG	80	0.0	39.375	2
CGACCGG	40	3.457717E-7	39.375	2
GTTAGCG	40	3.457717E-7	39.375	1
CCTCGTC	40	3.457717E-7	39.375	36
CTGCGCG	40	3.457717E-7	39.375	1