SRR3554014_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554014_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	635469
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC	1019	0.1603540062536489	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	879	0.13832303385373637	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	826	0.12998273715948377	No Hit
CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT	712	0.11204323106241217	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGC	20	7.030902E-4	45.000004	44
AAGCGTA	20	7.030902E-4	45.000004	22
CGTTAGA	20	7.030902E-4	45.000004	20
AGCGGAT	20	7.030902E-4	45.000004	4
CACTCCG	20	7.030902E-4	45.000004	35
CCATAGT	20	7.030902E-4	45.000004	25
CCGGTCG	20	7.030902E-4	45.000004	5
ATAACGC	20	7.030902E-4	45.000004	11
TATACGG	20	7.030902E-4	45.000004	2
GCGTAAG	40	6.8066583E-9	45.000004	1
CGCATCG	25	3.8888298E-5	45.0	21
TACGCAT	45	3.8380676E-10	45.0	16
CTACGCA	45	3.8380676E-10	45.0	15
CGAATAT	45	3.8380676E-10	45.0	14
GCTACGA	45	3.8380676E-10	45.0	10
CCAGTCG	25	3.8888298E-5	45.0	28
GATTACC	45	3.8380676E-10	45.0	9
TGATGCG	35	1.2107739E-7	45.0	1
GCGATTC	60	0.0	44.999996	9
CGTAAGG	95	0.0	42.631577	2